Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00450 ATGGCCATGCTAAAAGACATTGAATTTGGAGAACCGCGACAAGGTGGATTGGCTGCTAAAGACTATCAAGACCCACCACCCGCCCCACTGATCGACACAGAAGAATTAGCTCAGTGGTCATTTTACAGGGCCATTATTGCTGAGTTCGTAGCCACACTCTTGTTTTTGTATATTACAGTCTTGACTGTGATTGGTTACAAGAGCCAGGCTGACACAAAAGCTGGCGGTGACCAATGTGGTGGAGTTGGCGTCCTTGGCATCGCTTGGACCTTTGGTGGCATGATCTTCATCCTCGTCTACTGCACTGCTGGCATATCTGGAGGGCACATCAACCCCGCGGTGACATTTGGTTTGTTCTTGGCACGGAAGGTGTCTTTGGTTAGAGCTCTTCTGTACATGCTTGCTCAGTGCTTGGGTGCCATACTGGGGTGTGGATTAGTGAAGGCTTTCCAGAGGGAATACTACATTACATACGGTGGTGCTGCCAACGAACTTGCTCGTGGATTCAGCATAGGCACAGGGTTGGGAGCTGAGATCATGGGTACCTTTGTTCTCGTCTACACCGTCTTCTCTGCTACTGATCCAAAAAGAAATGCCAGGGATTCTCATATTCCTGTATTAGCACCTCTTCCTATTGGATTCGCTGTGTTCATGGTTAACCTGGCCACCATTCCCGTCACTGGCTGTGGTATCAACCCTGCACGAAGTTTTGGAGCTGCGGTGATGTTCAACGGGGTGAAGGCCTGGAATGACCATTGGATTTATTGGTTCGGACCCTTTATGGGTGCTGCCCTTGCCGCATTCTACCACGAGTATATTCTGAGAGCTGCAGCGGCTAAAGCTCTGAGCTCATTCAGGAGCTCCACCAAAATATGA 876 0.4954 MAMLKDIEFGEPRQGGLAAKDYQDPPPAPLIDTEELAQWSFYRAIIAEFVATLLFLYITVLTVIGYKSQADTKAGGDQCGGVGVLGIAWTFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYMLAQCLGAILGCGLVKAFQREYYITYGGAANELARGFSIGTGLGAEIMGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVNLATIPVTGCGINPARSFGAAVMFNGVKAWNDHWIYWFGPFMGAALAAFYHEYILRAAAAKALSSFRSSTKI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00450 291 CDD MIP 43 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 FunFam Probable aquaporin PIP1-2 28 289 - -
Pte15g00450 291 Gene3D Glycerol uptake facilitator protein. 28 291 IPR023271 -
Pte15g00450 291 SUPERFAMILY Aquaporin-like 35 275 IPR023271 -
Pte15g00450 291 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Pte15g00450 291 Pfam Major intrinsic protein 36 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 NCBIfam MIP family channel protein 47 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 18 285 IPR034294 -
Pte15g00450 291 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 PRINTS Major intrinsic protein family signature 253 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte15g00450 291 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00450 Pte-Chr15 3181806 3182920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00450 1 292 Major Intrinsic Protein MIP AT2G37170 74.658 1.21e-164 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00450 K09872 - pop:18100192 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00450 15 3181806 3182920 Pte15g00450 15 3181806 3182920 RCT
Pte17g00897 17 24077478 24078732 Pte15g00450 15 3181806 3182920 RCT
Pte18g01623 18 27656203 27657568 Pte15g00450 15 3181806 3182920 RCT
Pte15g01119 15 8381336 8383204 Pte15g00450 15 3181806 3182920 RCT