Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00445 ATGGGGCACAGATATATTTACAGCACACCCCAAATATTTGATGGTGAACATGAGCAAATCTGGACTCACATGCAAACAGATCAACGCTACTTGCATCTGGGAACTTTAGGTAGGAATAGTACTTCAGAGAACGACCCTGTATGTTACCCCATGGAGAATATTTCTGTAGATGGTCTTCCTTTCACTTCTCATTGGAGTCTTGCACCTGTTCCAAGCTCAAATGGTCATGGGTCCTCAAGTGTCACAGTTGAAGTGCCCCCACACCAGCCAGAACCTTCAGGAACAACTCATGACAATTTTCTGCATTTGTCAACTGCTGGATCCTTCTGCCCCTTCCCTGAGAATTATGTTCTGCATGGTTCTTCATCCAACTATGAAAGACCGGGTTTTCATGCAGTTGAGGGTGGTTATGTTGATCTCACAACGGGAAGTGGTAGGGGGGCCCACAAACGGAAGAGCCCAGGAATTCCCTCTGTCTGTGAAATTGGCAGTACTAGTAGTAGATACTTCAATTCTGATCTTCCTATTTCTTCAGAGTCACAGCAGGAGAAACAACCTATAGATTCTCAATATTTTCCTAGGGATCAGATTAACATAAATCCTCCTTATAGGGGCAATGCCCTTTCAATTAGGGGTAATGGTTCATTAAGGAATGTGAGAAGCCGTTCTGCAGTTGATGTGGAGTCCAATCTGGCAATGACCCATGCGTCAAGTAATCATTCACACATTTCCTTTTCGTCAATTCATGCAAGTAATCAATCTGGCGCTGTGGATCTTCCTGGTCAAGGTTCAAGCTCTTTATCTAGGGATTGGAGCCAAACAAACTTATCTCATGGACAGCGAGGATTGTTGTTTCCAGATACATGTGGCTTTGGTCGTGATACAAATCATTTCCTTGTCGGCAGCAGTGCTAGTAATGCTCCTCTAGACATGAGGGCATATCATCATGAATTTTCAACAAGAAATCCCAGTCTTCCACAGAATTTACTTGGCAATTCTATGCAGACTGTAAGACGAGCTCGGAATAACTACTCTCAAAGATCTAATCCATCTTTGAGGGCTTCCTCAAGCTTGAGAATGGGACATGTTGGTGATGGGTTGCATGTGGTGACTGAGAGTCACCCTGCTAGGCATTCAAGGTTGGCCAGCTCTGTCTGGCGTAACAGTGAGAGAAATGGGAGGTCTTTGCATGACCGATTCTCATCTGAGGGCTTTATGATTGTTGATCGTGCATCGTTCTATGGGCCTAGAAATATGTTTGATCAGCACAGGGGCATGAGGATGGATATAGACAACATGACTTACGAGGATCTGCTTGCACTTGGGGAACGAATTGGGCATGTTAACACGGGCTTACCTGAAGATCTGATCTCAAAGTGTATGACTGAAACGATTCATTGTTCTTCTGAACAAAGTCAAGAGGAAGGAACTTGCGTTATCTGTCTGGAGGAATACAAGGACATGGATGATATCGGTGCACTGAAAACTTGTGGCCATGATTATCATGTGAGCTGCATCAGAAAGTGGTTATCTATGAAGAATATCTGCCCCATATGCAAAGCTTCTGCGGTGGATGACTTGCAGGAGAAATAA 1593 0.4419 MGHRYIYSTPQIFDGEHEQIWTHMQTDQRYLHLGTLGRNSTSENDPVCYPMENISVDGLPFTSHWSLAPVPSSNGHGSSSVTVEVPPHQPEPSGTTHDNFLHLSTAGSFCPFPENYVLHGSSSNYERPGFHAVEGGYVDLTTGSGRGAHKRKSPGIPSVCEIGSTSSRYFNSDLPISSESQQEKQPIDSQYFPRDQININPPYRGNALSIRGNGSLRNVRSRSAVDVESNLAMTHASSNHSHISFSSIHASNQSGAVDLPGQGSSSLSRDWSQTNLSHGQRGLLFPDTCGFGRDTNHFLVGSSASNAPLDMRAYHHEFSTRNPSLPQNLLGNSMQTVRRARNNYSQRSNPSLRASSSLRMGHVGDGLHVVTESHPARHSRLASSVWRNSERNGRSLHDRFSSEGFMIVDRASFYGPRNMFDQHRGMRMDIDNMTYEDLLALGERIGHVNTGLPEDLISKCMTETIHCSSEQSQEEGTCVICLEEYKDMDDIGALKTCGHDYHVSCIRKWLSMKNICPICKASAVDDLQEK* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00445 530 CDD RING-H2_RNF24-like 476 523 - -
Pte15g00445 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 524 IPR013083 -
Pte15g00445 530 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Pte15g00445 530 MobiDBLite consensus disorder prediction 254 273 - -
Pte15g00445 530 Pfam Ring finger domain 477 520 IPR001841 -
Pte15g00445 530 MobiDBLite consensus disorder prediction 72 94 - -
Pte15g00445 530 SMART ring_2 478 519 IPR001841 -
Pte15g00445 530 SUPERFAMILY RING/U-box 468 523 - -
Pte15g00445 530 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 443 524 - -
Pte15g00445 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 146 524 IPR045191 GO:0061630
Pte15g00445 530 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00445 Pte-Chr15 3135855 3142158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00445 1 529 C3H Transcription Factor Family AT2G37150 39.609 1.20e-98 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00445 - - qsa:O6P43_006681 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00445 15 3135855 3142158 Pte15g00445 15 3135855 3142158 RCT