Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00435 ATGGTTTGCATATATGTCTCCAGGAAAACACGTGGAGCTGGAGCTGCTCGCAAGTTGAAGACTCATCGTAGGGAGGAACGATGGGCAGACAAGGCTTATAAGAAGTCACATCTTGGTAACGAATGGAAGAAACCATTTGCAGGATCTTCTCATGCTAAGGGAATTGTGCTCGAGAAGATTGGCATTGAGGCAAAGCAGCCTAACTCTGCTATCCGAAAATGTGCTAGAGTTCAACTGATTAAGAACGGCAAGAAAATAGCTGCATTTGTGCCAAATGATGGTTGCTTGAATTACATTGAAGAGAATGACGAAGTGTTGATTGCTGGGTTTGGACGAAAAGGGCATGCTGTTGGTGATATTCCTGGCGTTCGATTTAAAGTTGTTAAGGTGTCCGGTGTCTCTCTTCTGGCACTATTTAAGGAGAAAAAGGAGAAGCCCAGATCTTAA 447 0.4385 MVCIYVSRKTRGAGAARKLKTHRREERWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00435 148 CDD Ribosomal_S23 32 145 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte15g00435 148 FunFam 40S ribosomal protein S23 31 148 - -
Pte15g00435 148 SUPERFAMILY Nucleic acid-binding proteins 27 146 IPR012340 -
Pte15g00435 148 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 8 148 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte15g00435 148 ProSitePatterns Ribosomal protein S12 signature. 65 72 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte15g00435 148 Gene3D - 31 148 IPR012340 -
Pte15g00435 148 NCBIfam 30S ribosomal protein S12 13 147 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte15g00435 148 Pfam Ribosomal protein S12/S23 37 147 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte15g00435 148 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 22 148 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00435 Pte-Chr15 3077298 3079107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00435 9 149 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.326 3.78e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00435 K02973 - pda:103701997 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00435 15 3077298 3079107 Pte15g00435 15 3077298 3079107 RCT
Pte15g00435 15 3077298 3079107 Pte18g01648 18 27828847 27830697 RCT
Pte18g01648 18 27828847 27830697 Pte15g00435 15 3077298 3079107 RCT
Pte18g01642 18 27760236 27762086 Pte15g00435 15 3077298 3079107 RCT