LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte15g00428	ATGTTGGATCTTAATCTGAACGCGGCTTCTACTGATTCTGCTTCTGATTCTGTTGAAATGGTCATTGACAGGGTTAATCAAATCTCTGGTAGCCAAATGGACAATACTTACAGCTCTGCCTCTGCAAGCTTCAATTCCTCTGTTTCAGTCGTCCATGCTGACACCTCTACCAACACTGGCGACGATGACTCTTGTTCTTATGGAGGTGACTCTTTCGAGTATAACTTTTCCATTCTCAGTGACAAGGCTGCTTCCCAATCCTTTGTCCAGCTTCACCAAGATGAAAAGCATCCACCCCAACATCGGTCCTGCAATAAGCGCACCATCCAACTTTTCCCGGCCTCCGGTCCCGGACAACCCAGTGATGCTACTGGGTTTGCTGTGTCTTCCAGCAAGGAATGTTTGGATCTTTCAAGGAACGAAGTGGACTATGGTGGGGCGGTGGAGCCAAGTATATTGTCCCATCAGCAGCAGCAGCAATCCAGACAGCAGGTGAAGAAGAATCGAAGAGGACCAAGGTCTCGAAGCTCTCAGTATCGAGGTGTGACGTTTTATCGAAGAACTGGAAGGTGGGAGTCACACATATGGGAATGTGGGAAACAAGTTTACTTGGGTGGGTTCGACACTGCTCATGCTGCTGCTAGGGCATACGATCGAGCTGCAATAAAATTTCGTGGAATCGATGCCGATATTAATTTTAATATCAGTGATTATGACGAAGACACAAAGCAGATGAGTAACTTCACCAAGGAAGAATTCGTGCATCTCCTTCGTCGCCAGAGTACTGGTTTCTCCAGAGGAAGCTCAAAATATAGGGGAGTCACACTGCACAAATGTGGGCGATGGGAAGCACGAATGGGCCAGTTTCTGGGAAAGAAGTATATATATCTTGGACTATTTGATAGCGAGATAGAAGCTGCAAGGGCTTATGACAGGGCTGCTATCAAATTTAACGGCAGGGAAGCTGTCACAAACTTTGAGCCAAGCTTATATGAAGGAGAGGCTCTTGGTGAAACTTATAATCAAGATGGTGGGCAAAATCTTGATCTTAACTTAGCCATGGCTCCACCTTCCCTATCTGATGACCAAATGGACAACACATACAATGTGAACGGATTTTTTTTTCAGCATGGTCAGGATGGCATGCCACTTGATGGAAGGAAAATGGTGTCTGCATCGACATCACTGAAGTTACACCCATGTCATGTGTCGATGGTTCCTGGACCTCCTCCAATCTGGAATAACGCAAATTATTTATTTCCCACTTTTAAGGAAAGAGCAATAGAGAAGACGAATGGTGATTCCACGCCAAATTGGGCTTGGCAAGTCCAAGGTCCTTATGGTGTGTCCATTCAAGTTCCTCACTATTCTGCTGCAGCATCATCAGGATTCCCTTGTTCAACAAGAATTATGACTCCCGCTGACAACCAACCATACCTTCCAAATGCAACCAAGCCCCACTTTTCTACTGCAGGAGCTAAAGCAGTATTCCCTTGA	1497	0.4582	MLDLNLNAASTDSASDSVEMVIDRVNQISGSQMDNTYSSASASFNSSVSVVHADTSTNTGDDDSCSYGGDSFEYNFSILSDKAASQSFVQLHQDEKHPPQHRSCNKRTIQLFPASGPGQPSDATGFAVSSSKECLDLSRNEVDYGGAVEPSILSHQQQQQSRQQVKKNRRGPRSRSSQYRGVTFYRRTGRWESHIWECGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNISDYDEDTKQMSNFTKEEFVHLLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDRAAIKFNGREAVTNFEPSLYEGEALGETYNQDGGQNLDLNLAMAPPSLSDDQMDNTYNVNGFFFQHGQDGMPLDGRKMVSASTSLKLHPCHVSMVPGPPPIWNNANYLFPTFKERAIEKTNGDSTPNWAWQVQGPYGVSIQVPHYSAAASSGFPCSTRIMTPADNQPYLPNATKPHFSTAGAKAVFP*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte15g00428	498	Gene3D	AP2/ERF domain	269	328	IPR036955	GO:0003700\|GO:0006355
	Pte15g00428	498	Gene3D	AP2/ERF domain	177	236	IPR036955	GO:0003700\|GO:0006355
	Pte15g00428	498	Pfam	AP2 domain	269	319	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	Pfam	AP2 domain	178	226	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	CDD	AP2	177	236	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	SMART	rav1_2	178	240	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	SMART	rav1_2	270	333	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	SUPERFAMILY	DNA-binding domain	269	328	IPR016177	GO:0003677
	Pte15g00428	498	ProSiteProfiles	AP2/ERF domain profile.	178	234	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	SUPERFAMILY	DNA-binding domain	177	236	IPR016177	GO:0003677
	Pte15g00428	498	MobiDBLite	consensus disorder prediction	150	179	-	-
	Pte15g00428	498	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	112	353	-	-
	Pte15g00428	498	PRINTS	Ethylene responsive element binding protein signature	271	282	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	PRINTS	Ethylene responsive element binding protein signature	309	329	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	ProSiteProfiles	AP2/ERF domain profile.	270	327	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	MobiDBLite	consensus disorder prediction	151	165	-	-
	Pte15g00428	498	FunFam	AP2-like ethylene-responsive transcription factor	177	236	-	-
	Pte15g00428	498	CDD	AP2	269	329	IPR001471	GO:0003700\|GO:0006355
	Pte15g00428	498	FunFam	AP2-like ethylene-responsive transcription factor	269	329	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte15g00428	Pte-Chr15	3011897	3014549	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte15g00428	163	353	AP2-EREBP Transcription Factor Family	AT4G36920	80.102	3.77e-92	285

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Pte15g00428		AP2	3.4e-10	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte15g00428	K09284		-	qsa:O6P43_006713	567.385

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte15g00428	15	3011897	3014549	Pte15g00428	15	3011897	3014549	RCT
	Pte17g00866	17	23787531	23791246	Pte15g00428	15	3011897	3014549	RCT