Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00421 ATGGCAGCGGCACAAGAAACCACAACCCATGCAATCATGGCTGCACTCTCCACCCTCACCCCTTCTCATCTCTCAGCTGTGATCCAATCCATTCTCAAGAACCACCGCCACCACCGCTACCGCCTCTCTGCTCTCCTCTCATCCCCAACCCTCTTCTCTCTCACTCTCAATCACCTCCACTCCCTCCACCTCTCTAGCAAGACACGGCTCATTGCTCGCCATCTACTCTCCTCTCTGCGCAATCTCACATGCCACTTCCAGTCTCAGCTCTGCGCTCAGCCTCAACCTCCTCCCTTGTCCACCGCCATCAGAGACCGTGAACTTGATGCCGTTCTACTTCTCCTCTTGCTGTGTGAAGCACATCAGAATTTCCCAGAAGCTCTTCAAGCACCGCACTCAGAGTGGCGCGGTATCTTGAGCAACATCTACTGCGATGACATATTAAGAGTTTCTTCTTCAGCTGGCTTTATTTATGGTGCTGGGTGCCACGGCGTGGTTTTGATTCCATACATGGAGATGATCGGTCGGTGTTTGAGATTTGTATGCGCAATGGATCCTAGCAACCATAGTAGTGACTGTAAGGAGGGGAGAGAAGTAGCAGCATCGGTGGCGGAAGTTGTGGCATTGCCATCGGTGGAGGTGGAAAGTGGCGGGATGGAGTGTGTGATATGTAAGGAGGAAATGAAGCAAGGAAGGGATGTATGTGAACTGCCATGCCAGCATTTGTTTCACTGGATGTGTATACTACCCTGGTTTAGGAAGAGGAACACGTGTCCTTGTTGCAGGTTTCAGCTACCGTCCGATGACGTGTACCAAGAGATCCAACGGCTGTGGCACGTTCTGGTTAAAATGGGAGAGAGAAATTTCTGTAAATGA 876 0.5114 MAAAQETTTHAIMAALSTLTPSHLSAVIQSILKNHRHHRYRLSALLSSPTLFSLTLNHLHSLHLSSKTRLIARHLLSSLRNLTCHFQSQLCAQPQPPPLSTAIRDRELDAVLLLLLLCEAHQNFPEALQAPHSEWRGILSNIYCDDILRVSSSAGFIYGAGCHGVVLIPYMEMIGRCLRFVCAMDPSNHSSDCKEGREVAASVAEVVALPSVEVESGGMECVICKEEMKQGRDVCELPCQHLFHWMCILPWFRKRNTCPCCRFQLPSDDVYQEIQRLWHVLVKMGERNFCK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00421 291 SUPERFAMILY RING/U-box 215 272 - -
Pte15g00421 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 276 IPR013083 -
Pte15g00421 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 153 266 - -
Pte15g00421 291 CDD RING-H2_PA-TM-RING 220 262 - -
Pte15g00421 291 SMART ring_2 221 261 IPR001841 -
Pte15g00421 291 Pfam Ring finger domain 220 262 IPR001841 -
Pte15g00421 291 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00421 Pte-Chr15 2967440 2968800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00421 5 286 C3H Transcription Factor Family AT5G02750 50.690 1.45e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00421 K11982 - cave:132161979 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00421 15 2967440 2968800 Pte15g00421 15 2967440 2968800 RCT