Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00411 ATGGCGAGGATCAAGGTGCACGAGTTGAGGAACAAATCCAAGACCGATTTGCTGAACCAGTTGAAGGAGCTCAAAGCAGAGCTAGCGTTGCTCCGTGTTGCCAAGGTCACTGGTGGTGCCCCTAACAAGCTCTCCAAGATCAAGGTGGTGAGGTTGTCCATAGCGCAGGTGTTGACTGTGATTTCACAGAAGCAGAAAGCGGCTCTAAGAGAGGCTTACAAGAATAAGAAGTACTTGCCCCTTGATCTGCGTCCCAAGAAGACCCGGGCCATACGCAGGCGCCTAACCAAACACCAGGCCTCATTGAAAACAGAGCGCCAGAAGAAAAAGGAGATGTACTTTCCCTTGAGGAAGTATGCGATTAAAGTCTAG 372 0.5027 MARIKVHELRNKSKTDLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYAIKV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00411 123 FunFam 60S ribosomal protein L35 78 123 - -
Pte15g00411 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte15g00411 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pte15g00411 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pte15g00411 123 Gene3D - 78 123 - -
Pte15g00411 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Pte15g00411 123 FunFam 60S ribosomal protein L35 1 77 - -
Pte15g00411 123 Coils Coil 14 34 - -
Pte15g00411 123 CDD Ribosomal_L29_HIP 8 64 - -
Pte15g00411 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte15g00411 123 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00411 Pte-Chr15 2916744 2918321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00411 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 92.742 1.45e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00411 K02918 - ini:109147676 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00411 15 2916744 2918321 Pte15g00411 15 2916744 2918321 RCT