Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00398 ATGGGAGAAGAAACCGTTTGTGTTAAATTATTAGCTGAAACAGCGAGGGGTGACGATGATGCTTCAAGGAGTGAATTGAAAAGAGACCATCGATGTCTTGTTGATGCTTATACTGAACCAGATTCACTGCCACCTAAGAAACAAGTTAAAGAGGTTTCGAATGAAGATATTCGTTCAGAAGTCACGAGCCCCAATATTTCTTCCAAAGTGAACACGTCAACATTCCAGGATATCACTAGTCACTTATCTGAATCGGATCATGTTAACCAAGTAGAGTGTGGGGATTTGACATCAACTTGCTTGGAGAATTCTGGTTACGAGGAGAGCTCAAGCGATGGAGAGGGTAATCAGAATAGTACTGCTACTCATAATGATAGTAAGGTCTTGTCTGATGATGTAATGACATCTCGTATTGTGCTGGAAATACCTAAACATGCCAGTTCTACAGGAATCAGAAAAATAACTTTTAAGTTCAGTAAGAAAAAAGAAGACTACAAGAAACACATCCCTGCTTTAGTAAATCATACATTAGCTAGCAGGTTTACCTATGATGCTGCTGATGGCCTTCACGAGGAAGGGGAAGAAGAAGATGACGAGTCTTCGGGAATTGGTTACTGTGGAATGTTGATTGACAACTCACATGAAATTGATTACGCTGGAGCCAGTGATTCTTGTAATGCATATACTCGAAATATGGAATTGAAAATGTCAAAAAAGGTTGTTGCGAATTGCTATCCAACTAATGTCAAAAAGCTGTTATCCACTGGAATATTGGATGGAGCACGAGTGAAGTATATTTCTACAGCAGGAAATATGGAGCTGTGTGGTATCATAGAAGGTGGTGGCTATTTGTGCGGGTGTTATATATGCAATTATTCAAGAGTACTTAGTGCCTATGAGTTTGAGCAGCATGCTGGTGTCAAAACTAGACATCCAAATAATCACATATACCTAGAGAACGGAAGGCCTATATATAATATCATACAAGAATTGAAGACAGCTCCTGTTACTATCCTGGAGGAAGTTTTAAAGGATGTGGCTGGTTCTTCTCTGAATGAGCATTCCTTCCAGGTTTGGAAAGCGAGCCTTCCAAACAGCAATGAGAGGGTTGTAGAAGAAAGTTATTACGATCGCAAGTTATCAGGACTCCCTTATTCGCTTGTAAGTCAACCTACAAAAAGTGCGTACTATCTGCCACAATCATATGCTTCTTACAGTCCTGTCGATCAGCCAATTTTCCTAAAACGGAAGACCGAAAAGCAGAAGCGTATTTTGAAAAGGCCGAGTGCTTTCACATCTAGCTCAACTGTAAACCCGAAGAAAACCGTTGATGGTTACACCAAAAGAAGAGATAACGATCTGCACCGCTTACTTTTTATGCCAAATGGGCTTCCTGATGGTGCTGAACTGGCATATTATGTCAAAGGACAGCGTTTACTTGGTGGCTACAAGCAAGGAAATGGTATAGTGTGTAGTTGTTGTGACAGAGAGGTTAGTCCTTCACAGTTTGAAGCTCATGCTGGAATGGCTGCCAGACGTCAACCTTATCGCCACATTTATACTTCTAATGGACTGACACTTCACGATATAGCTCTTTCGTTGGCAAACGGTCAGAACATTGCCACTGGAGATAGTGACGATATGTGTGCAGTGTGTGGTGATGGAGGAGATTTGGTTCTGTGTAATGGATGCCCAAGGGCTTTTCACCTAGCTTGCTTGGACATGCAGTATGTTCCGGATGATAAATGGCACTGTGTAAACTGTAGAGATAATGCTGCCAATTGTAGAGAGGCAACGAGGGAATATTCTGGAACAGGAAAACCCATTATGATACGCTTATCAAGGGTTGTTAAAGCACCTGAATTTGAAATTGGTGGTTGTGTTGTTTGTAGGGCACATGATTTCAGTGCTGCTACATTTGATGAGAGAACAGTCATCATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGTTGCTTGCGGGTCAGTGGCCGTTGTGAGTTGACTGAGCTGCCCAAGGATAAATGGTTTTGTTCTGATGACTGCAATAGAATATATGGTGCTCTACAAAATTCAGTGTCCAATGGATCTAAGATAGTACCTCCTTCTTTGTCATGCATAATAAGTGAGAAGCTTGTTCAGAAAGGATTGCACATTGGTGGTTCTTTAGATGGTATCCAATGGCGAATTCTAAGTGGAAAAAGTCGTTATCCTGAACATTTGCCAATTCTTTCACGTGCTGCAGCCATTTTTAGGGTAGGTTAA 2265 0.4119 MGEETVCVKLLAETARGDDDASRSELKRDHRCLVDAYTEPDSLPPKKQVKEVSNEDIRSEVTSPNISSKVNTSTFQDITSHLSESDHVNQVECGDLTSTCLENSGYEESSSDGEGNQNSTATHNDSKVLSDDVMTSRIVLEIPKHASSTGIRKITFKFSKKKEDYKKHIPALVNHTLASRFTYDAADGLHEEGEEEDDESSGIGYCGMLIDNSHEIDYAGASDSCNAYTRNMELKMSKKVVANCYPTNVKKLLSTGILDGARVKYISTAGNMELCGIIEGGGYLCGCYICNYSRVLSAYEFEQHAGVKTRHPNNHIYLENGRPIYNIIQELKTAPVTILEEVLKDVAGSSLNEHSFQVWKASLPNSNERVVEESYYDRKLSGLPYSLVSQPTKSAYYLPQSYASYSPVDQPIFLKRKTEKQKRILKRPSAFTSSSTVNPKKTVDGYTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQRLLGGYKQGNGIVCSCCDREVSPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNIATGDSDDMCAVCGDGGDLVLCNGCPRAFHLACLDMQYVPDDKWHCVNCRDNAANCREATREYSGTGKPIMIRLSRVVKAPEFEIGGCVVCRAHDFSAATFDERTVIICDQCEKEYHVGCLRVSGRCELTELPKDKWFCSDDCNRIYGALQNSVSNGSKIVPPSLSCIISEKLVQKGLHIGGSLDGIQWRILSGKSRYPEHLPILSRAAAIFRVG* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00398 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 614 IPR013083 -
Pte15g00398 754 MobiDBLite consensus disorder prediction 102 128 - -
Pte15g00398 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 685 IPR013083 -
Pte15g00398 754 MobiDBLite consensus disorder prediction 428 442 - -
Pte15g00398 754 MobiDBLite consensus disorder prediction 428 447 - -
Pte15g00398 754 Pfam Tify domain binding domain 482 531 IPR032308 -
Pte15g00398 754 Pfam Tify domain binding domain 276 331 IPR032308 -
Pte15g00398 754 PANTHER AUTOIMMUNE REGULATOR 19 752 - -
Pte15g00398 754 Pfam PHD-finger 548 589 IPR019787 -
Pte15g00398 754 SUPERFAMILY FYVE/PHD zinc finger 626 680 IPR011011 -
Pte15g00398 754 SMART PHD_3 548 589 IPR001965 -
Pte15g00398 754 SMART PHD_3 626 682 IPR001965 -
Pte15g00398 754 SUPERFAMILY FYVE/PHD zinc finger 544 592 IPR011011 -
Pte15g00398 754 ProSitePatterns Zinc finger PHD-type signature. 549 588 IPR019786 -
Pte15g00398 754 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 536 619 - -
Pte15g00398 754 ProSiteProfiles Zinc finger PHD-type profile. 546 591 IPR019787 -
Pte15g00398 754 CDD PHD1_AIRE 548 588 - -
Pte15g00398 754 MobiDBLite consensus disorder prediction 35 68 - -
Pte15g00398 754 FunFam PHD zinc finger protein 625 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00398 Pte-Chr15 2850522 2856749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00398 1 752 PHD Transcription Factor Family AT3G53680 48.357 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte15g00398 TDBD 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00398 - - qsa:O6P43_006776 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00398 15 2850522 2856749 Pte15g00398 15 2850522 2856749 RCT