Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00393 ATGGCAGCATCAAGGCGGCTCCGAGACATTCAATCTCAACTGGGGAACAAGACATGCGTCGATTGCGCACAGAAGAATCCACAATGGGCGTCTGTTTCCTACGGCATCTTCATGTGTTTAGAATGTTCAGGCAAGCATCGCGGTCTCGGGGTTCACATCTCTTTCGTCCGATCCGTCACCATGGACACCTGGTCGGAGATTCAGATTAAGAAAATGGAATCTGGTGGTAATGACAAGCTCAACGCTTTCCTCGCACAGTATGGGATACCCAAGGAGACGGATATGGTTGCAAAGTACAACAGCAACGCTGCCAGTATCTATAGGGACCGAATTCAAGCTCTTGCTGACGGTCGGCCATGGAGGGATCCACCTGTTGTGAAGGAGAATATTGGTGGCAACCATAGAAAACCACCATTGGTACAAAGCAGCAGAGTTGGTGGTGATAGTGGTGGATATAATAGTATGAACAATAACAGTGGAAGATGGGATAGTTGGGACAACGAGGATGACGGGTTTAGATCTTCAAACGATATAAGGAGAAACCATTCTACTGGAAATGTGAGAGCTGTGAATGGTGCGGGCGGAACACCAATGAGATCAAAGTCCACTGAGGATATCTATACGCGGTCGCAATTGGAAGCTTCTGCTGCTAATAAAGATAATTTTTTTGCTAGGAAGATGGCTGAGAATGATTCCAGACCTGAAGGGAAGTCCCCTTCACAAGGAGGCAAGTACGTTGGATTCGGGTCGAGTCCTTCACCTCAACAGAGATATAATAATGCAGAAACCGATTATTTCTCAGTTGTTTCTCAGGGGATTGGTAAATTGTCACTGGTTGCTGCTTCTGCGGCTCAATCCGCCGCTAATGTTGTCCAGGCAGGGACTAGAGATATAACCGCTAAGGTAGTAAAGGAAGGTGGCTATGATCAGAAGGTCAATGAAACAGTCAGTGTCGTTTCTGCAAAGACTACTGAATTGGGACATAGGAGTTGGGGTATAATGAAAGGTGTCATGGCATTGGCTACACAGAAGGTCGGGGAGTATACAAAGGAAGGTAGCATTAACTGGGGTCCTGATAATTTGCAGCGAAATGAACACGAGAGAAATGGTTATTATCAGGATTACAATCGCCAGAGCCAAGGATGGAATTCTTCTGGAACAGGGCAATCTTCTTCTGATGCGGTTTCCAAATCTTTCAGTTCTAGCTCATGGGATGATTGGGACCAGAAAGATACTAGGAAGGAAGAGCCAAAGAAGGTAACTGCATCCAGCGACAATGATGGTTGGGCAGGCTGGGATGATCCCAAAGTTGATGGATATGATAATTTTAACAGTACCCCTGATAAGAATGCTGTCAGTCAAAAAGGGAAATCAGACTCGGCATGGACTGGTGGAGGCTTTCTTTAA 1407 0.4606 MAASRRLRDIQSQLGNKTCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDTWSEIQIKKMESGGNDKLNAFLAQYGIPKETDMVAKYNSNAASIYRDRIQALADGRPWRDPPVVKENIGGNHRKPPLVQSSRVGGDSGGYNSMNNNSGRWDSWDNEDDGFRSSNDIRRNHSTGNVRAVNGAGGTPMRSKSTEDIYTRSQLEASAANKDNFFARKMAENDSRPEGKSPSQGGKYVGFGSSPSPQQRYNNAETDYFSVVSQGIGKLSLVAASAAQSAANVVQAGTRDITAKVVKEGGYDQKVNETVSVVSAKTTELGHRSWGIMKGVMALATQKVGEYTKEGSINWGPDNLQRNEHERNGYYQDYNRQSQGWNSSGTGQSSSDAVSKSFSSSSWDDWDQKDTRKEEPKKVTASSDNDGWAGWDDPKVDGYDNFNSTPDKNAVSQKGKSDSAWTGGGFL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00393 468 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Pte15g00393 468 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 467 IPR044519 GO:0005096|GO:0016192
Pte15g00393 468 MobiDBLite consensus disorder prediction 376 403 - -
Pte15g00393 468 MobiDBLite consensus disorder prediction 117 204 - -
Pte15g00393 468 MobiDBLite consensus disorder prediction 228 258 - -
Pte15g00393 468 MobiDBLite consensus disorder prediction 146 162 - -
Pte15g00393 468 MobiDBLite consensus disorder prediction 178 204 - -
Pte15g00393 468 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Pte15g00393 468 SUPERFAMILY ArfGap/RecO-like zinc finger 5 111 IPR037278 -
Pte15g00393 468 MobiDBLite consensus disorder prediction 376 468 - -
Pte15g00393 468 MobiDBLite consensus disorder prediction 404 422 - -
Pte15g00393 468 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Pte15g00393 468 MobiDBLite consensus disorder prediction 244 258 - -
Pte15g00393 468 CDD ArfGap_ArfGap1 3 117 - -
Pte15g00393 468 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Pte15g00393 468 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Pte15g00393 468 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Pte15g00393 468 Pfam Putative GTPase activating protein for Arf 5 101 IPR001164 GO:0005096
Pte15g00393 468 MobiDBLite consensus disorder prediction 163 177 - -
Pte15g00393 468 MobiDBLite consensus disorder prediction 443 460 - -
Pte15g00393 468 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00393 Pte-Chr15 2813579 2816403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00393 5 145 C2H2 Transcription Factor Family AT4G21160 36.364 9.71e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00393 K12492 - qsa:O6P43_010403 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00393 15 2813579 2816403 Pte15g00393 15 2813579 2816403 RCT