Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00373 ATGGCTACGCAAGGTCAAGTCATCACCTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCATTGACCATTGAAGACGTACAGGTTGCTCCGCCACAGGCTGGTGAGGTCCGTGTTAAAATTCTCTATACCGCTCTCTGTCACACCGATGCCTACACTTGGAGTGGCAAGGATCCTGAAGGTCTCTTCCCCTGCATTCTTGGTCACGAAGCTTCAGGGATTGTGGAAAGTGTCGGAGAAGGTGTAACTGAAGTTCAGCCAGGAGACCATGTCATCCCCTGTTACCAGGCTGAATGTCGAGAATGTAAGTTCTGCAAATCAGGGAAAACAAATCTTTGTGGTAAAGTTCGTTCAGCCACTGGGGTTGGAGTCATGTTAAGTGATCGAAAGAGCCGTTTCTCAATAAATGGCAAACCAATTTATCATTTCATGGGGACCTCAACATTCAGTCAGTATACAGTTGTCCATGATGTTAGTGTTGCCAAGATCGATCCTATTGCTCCCTTAGAGAAAGTGTGTCTACTTGGCTGTGGTGTTCCAACTGGTCTCGGTGCTGTCTGGAACACTGCAAAAGTGGAACCTGGCTCAAATGTTGCTATCTTTGGCCTTGGAACTGTGGGGCTCGCTGTTGCTGAAGGTGCAAAAGCAGCAGGTGCTTCAAGAATAATCGGCATAGACATTGACAGCAAGAAATTTGATATCGCAAAGGACTTTGGCGTTACTGAGTTCATCAACCCAAAGGATCACGATAAGCCAATTCAACAGTTAATAGGGGACATGACAGATGGTGGAGTTGACTACAGTTTTGAATGCATTGGGAACGTCTCTGTGATGAGAGCTGCTTTGGAGTGCTGCCACAAGGGCTGGGGGACATCGGTTATTGTTGGTGTTGCAGCATCAGGCCAGGAAATATCAACTCGCCCATTTCAGTTGGTGACTGGTCGTGTCTGGAAAGGAACAGCTTTTGGTGGATTCAAGAGTCGTTCACAAGTGCCTTTACTGGTAGACAAGTACCTCAAGAAGGAAATCAAGATTGATGAGTACATTACTCACCAGTTGACTCTTGGGGAGATCAACAAGGCATTTGATCTTATGCATGAACGAGGCTGCCTTCGTTGTGTGCTTGCAACACACTAG 1137 0.4723 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPEGLFPCILGHEASGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDIAKDFGVTEFINPKDHDKPIQQLIGDMTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPLLVDKYLKKEIKIDEYITHQLTLGEINKAFDLMHERGCLRCVLATH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00373 378 Gene3D - 13 372 - -
Pte15g00373 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Pte15g00373 378 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Pte15g00373 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Pte15g00373 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 195 - -
Pte15g00373 378 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Pte15g00373 378 SUPERFAMILY GroES-like 326 375 IPR011032 -
Pte15g00373 378 Gene3D - 182 320 - -
Pte15g00373 378 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pte15g00373 378 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pte15g00373 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Pte15g00373 378 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Pte15g00373 378 SUPERFAMILY GroES-like 3 193 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00373 Pte-Chr15 2695912 2699319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00373 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.911 1.73e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00373 K00121 - cave:132165797 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00373 15 2695912 2699319 Pte15g00373 15 2695912 2699319 RCT