Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00356 ATGGAGTCAGATGAAGGGAAGCTATTCATAGGAGGGGTGGCATGGGACACAACCGAAGACAGTCTGTTAAGTCACTTCGGCCAGTATGGTGAGGTTTCTGAGGCTGTTATTGTGCGAGACAAGATCACGCAGCGGCCCAGAGGCTTTGCTTTCGTTATTTTCTCCGACACTTCTGTTCTCGACAGGGTGCTTCAAGAGCCTCATACCATCGACGGCCGCACTGTAGAGGTTAAAAGGGCTTTGTCAAGAGAAGAGCAACAGTCTTCTTCTAGAAATGGGAATACTTTTACTGGTAGGAGTTCAGGAGAGGGAGGAAGTTATAAGACGAAAAAGATATTTGTTGGGGGCTTGCCTTCCACTCTAACTGAAGATATGTTTCGCCAGTATTTTGAGAATTATGGCCGTGTAACTGATGTAGTTATAATGTATGACCAGAATACTCAACGAACTCGTGGTTTTGGTTTCATAACATTTGAATCTGAAGATTCTGTTGATAGAGTTTTACACAAGACTTTTCATGATTTAGATGGTAAATCAGTAGAGGTGAAGCGTGCATTGCCAAAAGATGCCAATCCAGGAGGCAGTAGCCGTTTTGGTGGGCACCAAGGTTACAATGCTTCTGGTGCCAATACAAATACATTTGATAGCCAGGTGGATAGAAATAAATTTATGCAGCCTCAAAATACTGCTGGAGGATTTTCACCTTATCCCTATATGGCACCAAGTTTTGGTTATGGGGCTTACGGAAGTTATGGTGTTGGTGGTTATGGAAGTGCGAACAGTGGCTTTGGGGGGCATGCAGGGGCTTATGGAAATCCAAATGCCCAAAATGCTGGATTTATCAGTGGAGCTCCTGGTGCTACCAGAAATGCTTGGAGCAACCAAGTTTCAGGATATGGTGCTTCCAGTTATGGATATACAGCTCCTTGGACAGGCAGTGGTGCTGCTATTTCTGCGCCAAGGGGACAATCGGGATATCCCACCTATCAGAGTTATGGTTATGCATATGGTAGTAATGGAGGTAATGACGGTTCTTTTTCAACTGGCCGTGCTGGTAATGTTGCTGCTGGGATTAGTGGAGGGGAGCAACAAGAATATGGCAGTGGATATGGTGATACCCATGGAAAATCAGGGTACCCCAGTGAAAGCTATCCCTCACAAGCAACTGGTAATTATGGTGGTGGTGGATACCAGTCTAGGAGAGCTTGA 1209 0.4533 MESDEGKLFIGGVAWDTTEDSLLSHFGQYGEVSEAVIVRDKITQRPRGFAFVIFSDTSVLDRVLQEPHTIDGRTVEVKRALSREEQQSSSRNGNTFTGRSSGEGGSYKTKKIFVGGLPSTLTEDMFRQYFENYGRVTDVVIMYDQNTQRTRGFGFITFESEDSVDRVLHKTFHDLDGKSVEVKRALPKDANPGGSSRFGGHQGYNASGANTNTFDSQVDRNKFMQPQNTAGGFSPYPYMAPSFGYGAYGSYGVGGYGSANSGFGGHAGAYGNPNAQNAGFISGAPGATRNAWSNQVSGYGASSYGYTAPWTGSGAAISAPRGQSGYPTYQSYGYAYGSNGGNDGSFSTGRAGNVAAGISGGEQQEYGSGYGDTHGKSGYPSESYPSQATGNYGGGGYQSRRA* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00356 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 169 IPR000504 GO:0003723
Pte15g00356 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 72 IPR000504 GO:0003723
Pte15g00356 402 MobiDBLite consensus disorder prediction 198 212 - -
Pte15g00356 402 SMART rrm1_1 111 183 IPR000504 GO:0003723
Pte15g00356 402 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte15g00356 402 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte15g00356 402 MobiDBLite consensus disorder prediction 187 212 - -
Pte15g00356 402 Gene3D - 87 205 IPR012677 -
Pte15g00356 402 MobiDBLite consensus disorder prediction 356 402 - -
Pte15g00356 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Pte15g00356 402 CDD RRM2_Hrp1p 111 188 - -
Pte15g00356 402 Gene3D - 4 86 IPR012677 -
Pte15g00356 402 MobiDBLite consensus disorder prediction 80 104 - -
Pte15g00356 402 MobiDBLite consensus disorder prediction 86 104 - -
Pte15g00356 402 MobiDBLite consensus disorder prediction 379 394 - -
Pte15g00356 402 SUPERFAMILY RNA-binding domain, RBD 3 106 IPR035979 GO:0003676
Pte15g00356 402 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 397 - -
Pte15g00356 402 SUPERFAMILY RNA-binding domain, RBD 108 211 IPR035979 GO:0003676
Pte15g00356 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte15g00356 402 FunFam heterogeneous nuclear ribonucleoprotein 1 104 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00356 Pte-Chr15 2586687 2589142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00356 8 184 Eukaryotic Initiation Factors Gene Family AT2G23350 21.788 2.06e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00356 K14411 - jre:109010726 516.153