Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00340 ATGGGCAGCAAACGTGCAAGAGTATGTGAAGATGATGTGAAGAAGAAAACTCTTTCAGCGCCTCCTGGTTTCATCTCACTCACGTCCTTCACTCTGAAGAGAATTGCAGAAGGTCAGGGATCGAATTGCTTGGCCTCTGCCAATGCAATGCAGATGAATGCAACGCCGGATGCATCTGAAATCGATGCACTGAGAGCAACTTATAGCCGGAGGCCGTGGATACTTTTTCATGAGAGCAACGAAATCCCAGAAGAGGATTACGCAGAGCTTCAAGATACACGTCTTCCTTTAAGTTCAAAACGTTCCAAAGGAGTTACAAGGGGATGTCCCGATTGTAGTGATTGTTTGAAGGTAACGGCAAGGTGGCGCCCACAAGATTCTGCAAGAGATGTACTTGAAGAAGCTCCTACTTTTACACCATCAGATGAGGAATTTGAAGATGTACTTAAATATATAGCAGGCATACGTCCCCAAGCCGAGCATTCTGGAATTTGTCGTATTATTCCCCCCTCTTCATGGCAACCACCAGAGGCTCCCTCGGAAAAGGAAGACTACAAATTTGTTTCCACTATCCAACGGGTTGATAGCCTTCAAACCCTTTCACAATATAAACGGGACGGTATTTTTGGGAATGTAAAAGCAAAGAGAAGAAGAGGTCTGGATGTGACTTTAAACTCTCGAATTGATGGACTGCGTGATCCAGAAATTGAATGTGGTCTCAGATCCCAACCTGGTCCAGAATTCACTCTTAAATCTTTCAAGAAATTTGCAGATGATTTCAAAGGTCAATACTTTGGTTATGATGGACCAGCTACTAATGTTAGCCAAGTGCAGTTGGAACCATCAGTGGAGGATATTGAGGGTGAATATGGAAGGATTACGCAGAATCCCACTGAAGAAATTGAGGTACTTTATGGAAATAATTTGGAGTGGAGAACTGCTTGGAATAAGTGTCCAGAAACTGGAAAGAATTCTGTATGGAACTTTCACAAATTACCTCGGTTTCATGGTTCTCTTCTATCTTTTGAAAACAGTGGTTCTAATGTTTTGGTACCTAAACTACATGTTGGCATGTGCTTTTCGTCACATACTTGGAAAGTTGAAGAGCAGCACTTGTACTCATTGGTATACTTGCATTTGGGCTCACCCAAAGTATGGTATGGCATCCCTGTGAACTATTCTATGAAATATCAGAATGCTAGGAATAGTTACCTGGCAGAACTTTCCCACGTTCACGGTGAATTGGTAGCACAGTTATCTCCTTCCAACCTGAAGTCAGAGGGTGTACCTGTATATCGATGTGTTCAGCGCCCTGGAGAACTTGTTCTTGTCTTCCCCGGAGCATATCATTCAGCTTTCAGCTGTGGTTTTAATTGTTCCGAAGCAGTAAATTTTGCACCTATTGATTGGATCTGTCATGGACAGCATGCTGTTGAACTTTATTCTTTACGGAGGAAAAAGACATCAATTTCCTTTGATAAACTTTTACTGGGAGCAGCAAGGGAAGCTGTGAGAGAGATGTGGGAAACCAATCTGCGTAGGAAGAACGCTTCAGCTAATTTAACTTGGAAGAATGCCTGTGGTAGAGATGGTTTGTTGACAGTAGCACTCAGATCACATATCAAGAACGAAACAAGGAAGAGGAAATATCTCAACACCTTTGAATCGCAGAGAATGGACAGAGATTTTGATGCTGTTTGCAAAAGGGAATGCAGCTTCTGCATGTACGACTTGCATGCTTCTGCTGTGCATTGCCGCTGTTCAACGGACAAATATTCGTGTCTTTTACATGTAAAGCAGCTATGTTCTTGTCCTAGAAGTGAAAAAGTTCATCTCTTCCGTTACGAGATTGAGCAGTTAAATGTCCTTCTTGAAGCTTTGGGAGGAAAACTAATAGCAGTCTACAAGTGGGCTAAAGAAGATCTAGGTTTGGCTCTGGCCCCAGCTGCTTCGGAAAGATGTCTTCAAACCCCAAGTATGGATTGTCAAACAGCTCGTGCAAAAGAATCAAAGGAAGGACCAAATTCAAACGGATTAAATTTTGGGAGAGATGTCATTACAACCTCTACGGTTAGGACAGAATCAAAAGCACGTCTGCTCCATTCAAAAGCATCAGATGAGTTGAGAACAAAACATAATATGTTGGAGACTGAAGGCAAAGGAAAACCTGTCAACACTAGGTGCAGTTCTGTTTCCAAGTTATACGCAAAAACCAAGGAAACACTGCCTCAATCGAGTGAGTTGAAAGGTAAACAACAGGCAGTGAGATCTCCTTTATCAGGAACATTTAGTGGCATTGGTAATATCATTGCATCTGGTGTGAAATTCAGTCTGAAGCCAAAAGCACTTGACTCACAAATCCTAGACAAAGTGAAACAGAAACCAGTAGCATCGACCGATCCAGGGGGAAACATGCGATTAGAAATATCATCTGATGAAAGCTCAGATTCTGAGGATGCAGCAGCTCCGGAGTCAGCTCTTGGGAAAACGTAG 2493 0.426 MGSKRARVCEDDVKKKTLSAPPGFISLTSFTLKRIAEGQGSNCLASANAMQMNATPDASEIDALRATYSRRPWILFHESNEIPEEDYAELQDTRLPLSSKRSKGVTRGCPDCSDCLKVTARWRPQDSARDVLEEAPTFTPSDEEFEDVLKYIAGIRPQAEHSGICRIIPPSSWQPPEAPSEKEDYKFVSTIQRVDSLQTLSQYKRDGIFGNVKAKRRRGLDVTLNSRIDGLRDPEIECGLRSQPGPEFTLKSFKKFADDFKGQYFGYDGPATNVSQVQLEPSVEDIEGEYGRITQNPTEEIEVLYGNNLEWRTAWNKCPETGKNSVWNFHKLPRFHGSLLSFENSGSNVLVPKLHVGMCFSSHTWKVEEQHLYSLVYLHLGSPKVWYGIPVNYSMKYQNARNSYLAELSHVHGELVAQLSPSNLKSEGVPVYRCVQRPGELVLVFPGAYHSAFSCGFNCSEAVNFAPIDWICHGQHAVELYSLRRKKTSISFDKLLLGAAREAVREMWETNLRRKNASANLTWKNACGRDGLLTVALRSHIKNETRKRKYLNTFESQRMDRDFDAVCKRECSFCMYDLHASAVHCRCSTDKYSCLLHVKQLCSCPRSEKVHLFRYEIEQLNVLLEALGGKLIAVYKWAKEDLGLALAPAASERCLQTPSMDCQTARAKESKEGPNSNGLNFGRDVITTSTVRTESKARLLHSKASDELRTKHNMLETEGKGKPVNTRCSSVSKLYAKTKETLPQSSELKGKQQAVRSPLSGTFSGIGNIIASGVKFSLKPKALDSQILDKVKQKPVASTDPGGNMRLEISSDESSDSEDAAAPESALGKT* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00340 830 ProSiteProfiles JmjC domain profile. 321 482 IPR003347 -
Pte15g00340 830 Pfam jmjN domain 136 169 IPR003349 -
Pte15g00340 830 SMART cupin_9 321 482 IPR003347 -
Pte15g00340 830 MobiDBLite consensus disorder prediction 792 830 - -
Pte15g00340 830 SUPERFAMILY Clavaminate synthase-like 296 509 - -
Pte15g00340 830 Gene3D Cupin 120 466 - -
Pte15g00340 830 PANTHER LYSINE-SPECIFIC DEMETHYLASE 130 749 - -
Pte15g00340 830 SMART JmjN_1 134 175 IPR003349 -
Pte15g00340 830 ProSiteProfiles JmjN domain profile. 135 176 IPR003349 -
Pte15g00340 830 Pfam JmjC domain, hydroxylase 354 465 IPR003347 -
Pte15g00340 830 Pfam C5HC2 zinc finger 571 621 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00340 Pte-Chr15 2467645 2472384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00340 1 651 JUMONJI Transcription Factor Family AT1G08620 45.989 1.92e-180 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pte15g00340 JmjC 1.8e-34 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00340 K11446 - cave:132166310 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00340 15 2467645 2472384 Pte15g00340 15 2467645 2472384 RCT