Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00328 ATGCAGGCCGATACAATCTCAGAGACACATCACCCTCCTTCAGACTCTGCTTCTCCTATGTTAGCCATCGGCGTGCTAGGCATCGTGGCAACAGTTTTTGCACTTGTGTGCTACTTCGTTTTTGTGAATAGATGCTGCTCAAACTGGCGTCATGTAAACTTGTTAAGATGGTTTCCCGTGTCACGTCCACGACAAGATGAAGATCCCTTCATAGCATTCTCCCCCACAATGTGGAATCGTGGCCTTGATGACTCAGTGATCAAAGGAATCCCAGCTATCCGATACAGTAAACCAGAAGGTAAGGAGAAAGGTGTGTTGGGTTGTGTTGTATGTTTGAATGAGTTTCAACAAGGGGATCCACTGAAAGTTCTTCCAGTTTGTAGCCATGCATTTCATACAGATTGCATTGACATCTGGCTGGAAAGCAATGCCAACTGTCCTCTTTGTAGATCAAGCATTTCTGGTACTAAATATTCTCATGGGAATCACATAATTGCGCCGAGCTCTTCACCTCAAGATTCTCAAATACTTTCTAACATTAGTGATGAAGATTTTGTTGTGATTGAATTGGGAGAAGATGGTGAAGCATTGCCACAAAGAAGACGAGATAGAAATGAATTACGGGAAGCTTTTGATCACTGCAGGAGTCCTCCTCCTCCTCATCATCAGTTGTCCAGAAAATATAAAGTTGGAGACTTGAAAACCAGAAAATGTCACCATGTGTCAATCATGGGAGATGAGTGCATTAACGTAAGGGAAAACGACGAACAGTTCTCAGTCCAACCAATTCGGAGATCTTTCTCAATGGATTCAGCGGCTGACAGACAACTTTACTTGACTATCGAAGAGATAATTCAAGACAACATGCATGTTAATGAAGTCAGGGGAAGTGATTATCACGATAATAGAGGTCGAAGATCATTCTTTCCATTTTGCCATGGTCGCGGATCAAGGAATGCAGTTCTTCCTCTGGAAAATGAGACTTGA 987 0.4276 MQADTISETHHPPSDSASPMLAIGVLGIVATVFALVCYFVFVNRCCSNWRHVNLLRWFPVSRPRQDEDPFIAFSPTMWNRGLDDSVIKGIPAIRYSKPEGKEKGVLGCVVCLNEFQQGDPLKVLPVCSHAFHTDCIDIWLESNANCPLCRSSISGTKYSHGNHIIAPSSSPQDSQILSNISDEDFVVIELGEDGEALPQRRRDRNELREAFDHCRSPPPPHHQLSRKYKVGDLKTRKCHHVSIMGDECINVRENDEQFSVQPIRRSFSMDSAADRQLYLTIEEIIQDNMHVNEVRGSDYHDNRGRRSFFPFCHGRGSRNAVLPLENET* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00328 328 FunFam E3 ubiquitin-protein ligase ATL6 73 156 - -
Pte15g00328 328 CDD RING-H2_EL5-like 108 150 - -
Pte15g00328 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 155 IPR013083 -
Pte15g00328 328 SUPERFAMILY RING/U-box 104 154 - -
Pte15g00328 328 Pfam Ring finger domain 108 150 IPR001841 -
Pte15g00328 328 PANTHER RING-H2 FINGER PROTEIN ATL16 8 325 IPR044600 GO:0016567|GO:0016740
Pte15g00328 328 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Pte15g00328 328 SMART ring_2 108 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00328 Pte-Chr15 2366875 2367937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00328 14 285 C3H Transcription Factor Family AT1G04360 42.000 8.52e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00328 K19041 - qsu:112025162 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00328 15 2366875 2367937 Pte15g00328 15 2366875 2367937 RCT