Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00310 ATGGCCATTGATGCTATTCACCTTGGACAAGACGGGGTGGTAGAGGCAGCTCAGTCGGAGCAGCCAAAGATTCCTTTATTTGGTCCAACGGTGACGAACCAGCGGGTTCATTTTCGAGGAGTTCGGAAGCGTCCGTGGGGACGTTATGCTGCCGAGATCCGAGACCCGTGGAAGAAGACGAGGAAATGGCTTGGTACTTTTGACACCGCTGAGGAGGCTGCTAGGGCTTATGATGAGGCTGCTAGAAGTCTCAGAGGTCCCAAGGCGAAGACTAACTTCGTCTACGCTAATGTCGTGCATCCATCTCCTCCTCCAGTCATGACCATGCCTCAGCCTGTTAGCGGGGGATGCGGTTGTGCTGAAATGATCGGGAGGCAAGTAGAGTTTTGGAGGTGCCAACCGGCGATGTACTTTGCTGCCGATGATTTTCCAATGGCATCAGCGCCGGTCAGGTCTGAGTATAAAGGGTACAAGTTGGAGAATGTAGATGTCGTCGTCAACGAAGAGGATAGAAAAATGAAGAAGGAGAAGAAACCTTTCTTGTTTGATCTAAACGAACCGGCGCCGCTGTTTTGA 576 0.5156 MAIDAIHLGQDGVVEAAQSEQPKIPLFGPTVTNQRVHFRGVRKRPWGRYAAEIRDPWKKTRKWLGTFDTAEEAARAYDEAARSLRGPKAKTNFVYANVVHPSPPPVMTMPQPVSGGCGCAEMIGRQVEFWRCQPAMYFAADDFPMASAPVRSEYKGYKLENVDVVVNEEDRKMKKEKKPFLFDLNEPAPLF* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00310 191 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Pte15g00310 191 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Pte15g00310 191 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Pte15g00310 191 CDD AP2 37 93 IPR001471 GO:0003700|GO:0006355
Pte15g00310 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 128 - -
Pte15g00310 191 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Pte15g00310 191 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Pte15g00310 191 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Pte15g00310 191 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Pte15g00310 191 FunFam Ethylene-responsive transcription factor 2 36 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00310 Pte-Chr15 2234403 2235652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00310 30 93 AP2-EREBP Transcription Factor Family AT5G44210 82.812 2.80e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte15g00310 AP2 4.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00310 K09286 - qsa:O6P43_006945 202.986