Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00307 ATGTCGAATCAAGTCGTGCAAGTGAGCAGGGAGAAACTCGTTGCATGCATGACATGCCCACTGTGTGATAAGGTGTTCAAAGACGCTACAACCATAGCTGAATGCCTTCACACTTTTTGCAGGAAGTGCATACACGATAAACTGTCTGATGAGGACATAGAACAGTGTCCAGTATGCAATACTAATCTGGGGCCTACTCCACTGGAGAAGTTGAGGCCAGATCACGACTGGCAAGATTTAAGGGCTAACATTTTTCCAAGGAAGAAGAGAAGTAAAGTAAAGAAACGTGAAGTTCCTTCATCAGGGACATTGCCACCAGAAGTTCCTCCAGGGATATTGCAACCCGAGGTTTCATCATTTCCACCAAAAAGAAAGGAAAGGTCTCTTTCTTCATTAGCATTTGACACTCCCAAAGTATCAAACCAGGCAACTGTGACAGGAAAGAGAACTAAAACTATTACAAGAAAGGCTTCTGCCATCCGAGGTTCCAGTTTTTCAATTGAGAAACCCATTAAGATAGAGGAAGATCATGCAGAAGATCATTCAAATAATTCAAGTTCACCCGAGCCTTCAATCAAGTTTTGGAATAATAGTAGGCAGAGTTCCTCCACTGGCGAACCTAGTCAATCTCCAGAAGATAAGGAACAAGAAAATGGTGCTGAGCCTTGTGAAACAAAAGGTGATCTTTGGAAACCTCTAAATTATTTGGTGGAGGCTGCTAGTAGGAGTAAATTGTTAAGGTCTAGTTCCCAAGGATGTGACACTAAATCTGAAGCCAGACCACTGAATGGAAGTGAAGTCCAAGGTCGTGAATCCAAAAGTAAGGGGAGCAGGCGCAAAATAAAACTTAGAGATGAAAAGATAAGTGCAGATCACTCTCCAGGTACAGCAAAATCTAGTAAATCGCGTATGAATCGCCTGAAAAAGGAATCTGTTGGAGAAGCAACCATTTCACCTCAAGCAATATTGGATTTGGCCAGTGGCAAAAGTGAGAGAAGAGACGGTCCTGTTTGGCTCTCTCTTTTAGCTTCTGAAAATCAGCCAGGAGTAGCGCCATTGCCACAAATTTCTGGGCACTACTTGAGAATTATCGATGGCAGTGCCTATGTCTCGTACATACAAAAGTACTTGAGAACAAAACTAGAGCTTGCCAGTGAAGAAGAGGTTGAGATACGATGCATGGGACAACCTGTTGACCCTGCTCTGAAAATACATAACATAGTTGATTTGTGGCTGCAATCAGCTCACAGATCCCAACGAATTGCTGTCAAGTTAGGTTCCCCGGCAGAGGATTTTCTGGTGGTGCTAAGCTATGCTCGGAAGGTTGTGCATTCTTGA 1338 0.4327 MSNQVVQVSREKLVACMTCPLCDKVFKDATTIAECLHTFCRKCIHDKLSDEDIEQCPVCNTNLGPTPLEKLRPDHDWQDLRANIFPRKKRSKVKKREVPSSGTLPPEVPPGILQPEVSSFPPKRKERSLSSLAFDTPKVSNQATVTGKRTKTITRKASAIRGSSFSIEKPIKIEEDHAEDHSNNSSSPEPSIKFWNNSRQSSSTGEPSQSPEDKEQENGAEPCETKGDLWKPLNYLVEAASRSKLLRSSSQGCDTKSEARPLNGSEVQGRESKSKGSRRKIKLRDEKISADHSPGTAKSSKSRMNRLKKESVGEATISPQAILDLASGKSERRDGPVWLSLLASENQPGVAPLPQISGHYLRIIDGSAYVSYIQKYLRTKLELASEEEVEIRCMGQPVDPALKIHNIVDLWLQSAHRSQRIAVKLGSPAEDFLVVLSYARKVVHS* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00307 445 MobiDBLite consensus disorder prediction 184 209 - -
Pte15g00307 445 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pte15g00307 445 SMART ring_2 19 59 IPR001841 -
Pte15g00307 445 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 441 IPR044807 GO:0004842
Pte15g00307 445 MobiDBLite consensus disorder prediction 244 311 - -
Pte15g00307 445 MobiDBLite consensus disorder prediction 210 224 - -
Pte15g00307 445 MobiDBLite consensus disorder prediction 88 135 - -
Pte15g00307 445 MobiDBLite consensus disorder prediction 244 270 - -
Pte15g00307 445 MobiDBLite consensus disorder prediction 177 231 - -
Pte15g00307 445 MobiDBLite consensus disorder prediction 271 292 - -
Pte15g00307 445 CDD RING-HC_PCGF 17 60 - -
Pte15g00307 445 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Pte15g00307 445 SUPERFAMILY RING/U-box 14 75 - -
Pte15g00307 445 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Pte15g00307 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 102 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00307 Pte-Chr15 2208007 2213653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00307 3 363 C3H Transcription Factor Family AT2G30580 47.123 8.48e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00307 K16277 - qsu:112007570 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00307 15 2208007 2213653 Pte15g00307 15 2208007 2213653 RCT