Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00288 ATGTTTGCTGCAGTCATGTCCAATTCACCTTCTTTGTCTGAAAAAGTTAGCGTTACTTCGAGTACAAGAACCCAAGACTATGAAGGTTTAGATATCGTGGTTTCAACCATATCTTCTCCGCAGCCACAGAAGAACAAGAGAAAGAGAAGTCTTCCAGGAAACCCAGATCCAGATGCTGAAGTGATTGCCTTATCTCCGAAGACCCTTCTAGCTACCAACAGATTTGTGTGTGAGATATGCAACAAGGGTTTCCAGAGAGATCAGAACCTTCAACTTCACAGAAGAGGCCATAACCTTCCATGGAAACTGAAGCAAAGGAACGTCAATGAATTCAAAAAGAAAGCCTACGTTTGTCCTGAACCATCATGCGTTCACCACAATCCTGCAAGGGCTCTTGGCGATCTTACGGGTATTAAAAAACACTACTGTAGGAAGCATGGAGAGAAGAAATGGAAATGTGAAAAATGCTCAAAGGTTTATGCAGTCCAGTCAGACTGGAAGGCGCACACTAAAACCTGTGGAACACGGGAGTACAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCGTCACCCACAGAGCATTTTGTGATGCATTAGCTGAAGAGAGTGCTAGAATTTCAGCAAGTCAATTAACTGCCAGTACAAACCCATTACTTCAATCCCTTTTCTCTGATCTCCCATCCCAACAAATCTCTCTTAATCAATGGGACCCACCCCAACAAAACCCTAACCCTAGCAGCCCTCAAAACCTAACTGTTTGCTCCCAAATCAAACTCGAGGCTCGTCCTCATCTCCATATCCCATCGCTTTCTCCTCCATCATCGCTACCACCTTCGTACTACCAGAATCCACAACCGCAGAAGAGTTTGATAGCCTCACCCTATCAAAGACTCCATGTGACCACAAATACCACTTCAAACGCGACCGCCTCAGCTCACATGTCAGCCACTGCAATCCTCCAAAAGGCTGCTACAGTAGGTGCCAGTGCAACGAGAGTCACAGGTAAGTTTTCTCCACCATTTGCTAATGCTGTAAAACACGCTCACCAGTCGGCAACTCAGAAACATATGGACGAGTTAAGACAGATTGAAGCATTAGGCCAGGTCACCGTGGAGGACTATATGGGACGAGGCGGAATGTTCACGTCAAACAATCTCCCCGCGTGGCAGAAGTCTGACCATCTGACGAGAGACTTTCTGGGTCTGACCGGGGACTCCAATCGTGGTGATCATGTCGGGGAAGATACCGCTGGACTAGTTAAGGTTAGCATAGATGACAAGGATGTGCTAACGTTCACGAATAGTGAAGAGTATCAACAAGAATACGATCAACCTCGTCAAGGTCACGGTCAACACTCACCGTTAAAGCCGCCACAACATCAAGGTTACGGATTTGCTGAGACTGCCTACGCCCCTGAGACATGGGGAACTGTGGACATAATGAGACAAACCCAAGACAATCTGATGAGGGGTAGGAAGGTCATTTGA 1497 0.4669 MFAAVMSNSPSLSEKVSVTSSTRTQDYEGLDIVVSTISSPQPQKNKRKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNVNEFKKKAYVCPEPSCVHHNPARALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHTKTCGTREYRCDCGTLFSRKDSFVTHRAFCDALAEESARISASQLTASTNPLLQSLFSDLPSQQISLNQWDPPQQNPNPSSPQNLTVCSQIKLEARPHLHIPSLSPPSSLPPSYYQNPQPQKSLIASPYQRLHVTTNTTSNATASAHMSATAILQKAATVGASATRVTGKFSPPFANAVKHAHQSATQKHMDELRQIEALGQVTVEDYMGRGGMFTSNNLPAWQKSDHLTRDFLGLTGDSNRGDHVGEDTAGLVKVSIDDKDVLTFTNSEEYQQEYDQPRQGHGQHSPLKPPQHQGYGFAETAYAPETWGTVDIMRQTQDNLMRGRKVI* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00288 498 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Pte15g00288 498 SMART c2h2final6 75 97 IPR013087 -
Pte15g00288 498 SMART c2h2final6 151 171 IPR013087 -
Pte15g00288 498 SMART c2h2final6 116 146 IPR013087 -
Pte15g00288 498 Gene3D Classic Zinc Finger 75 120 - -
Pte15g00288 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Pte15g00288 498 MobiDBLite consensus disorder prediction 269 290 - -
Pte15g00288 498 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Pte15g00288 498 MobiDBLite consensus disorder prediction 443 466 - -
Pte15g00288 498 MobiDBLite consensus disorder prediction 34 48 - -
Pte15g00288 498 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Pte15g00288 498 FunFam protein indeterminate-domain 12-like 54 122 - -
Pte15g00288 498 Pfam Zinc finger, C2H2 type 75 97 IPR013087 -
Pte15g00288 498 Gene3D Classic Zinc Finger 129 208 - -
Pte15g00288 498 MobiDBLite consensus disorder prediction 235 254 - -
Pte15g00288 498 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 424 IPR031140 -
Pte15g00288 498 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00288 Pte-Chr15 2090636 2094053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00288 25 447 IDZ Gene Family AT4G02670 48.064 4.27e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g00288 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00288 K25870 - qsa:O6P43_010584 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00288 15 2090636 2094053 Pte15g00288 15 2090636 2094053 RCT