Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00275 ATGCGGGAAGGCTTGAGATCTGGCAAGGCTTTGGCTAAGTCGGTGCCAGAGAAATTGGAGATCAATGATGTTGTGTTGAATGGAGTGGAGGGTTTGTGCTTAGTTTCGTCCAGGCTGGGTTATAAGGAAGAGTTATTAAGCCGGGGGACTGAGAAGACTCAAATACAACATGTAAAAAAAGATTGTACATCTCACGAGGAAATGGCTTCGGGTAATTGTGTTCACTCATTCGTGAATAAAAAGGGGCGAAAGAGTTCAAGTAGGGGAAATGCTTGTCGTCAGAATGAGAATAAGGAGAAGCACGGAGATTTGTCTGGTGAAGGGCAGTTTAGTGGTAGGGTTTTACGTTCAAAGACTAAATGTAATTTGCCTAGAGGAGAGGAAGAAGCTAAGTCTATTCCCGAAGAGAGTGAAGATATTCTGGTAACAAAGAGAAAGATGAAGGCTGAGAAGGAAGATGATGATTTCGTTGATGTTATTGTTGACAAGAATAAGACAATAGTTAAGATAGAAAGCATAGATTCTCTTGGAACAGGTCATGGTTTAACGAACAAATCACAACGTAAGCGTTGGAAATCTGCTGCATTCAATACGGAAGAGCATAAACAGTTCCTCAAGAAAGTTAACCAGCAATCAAGTGGCAAGTGCCAGCTGTCCTCCAACTTGAAGGGAAGTAACGGTCTTGTAAAAGTAGTATCTCGTGAGAAAGTAATCCAGAATAGAAGGAAATGTTCAAATATGGAAGTCAATATGAAGAATAATGCCACACCCGAAAATAAACAAACACAAGAAGTATACAGATGTTCGCCTAAACACTCAAAAGTGAAGAGTTCTTCACCTGCTAAGAAAGCTCCTACTAGGAAGCAATTGTTAAGGGAAAAAATAGCTGAAATACTCTTTGCTGCGGGTTGGAAAGTTGATTATAGGCCTAGAAATAATAAGGATTACTTTGATGCTGTGTATGTTAGTCTGGATAGGAGGACTCACTGGTCAATTACGTTGGCCTACAGGAGACTCAAACAACATTATGAAGCTGGTGACGGTGAAGATAAGGTATATAAGCCAGGATTTAAGTTTACACCAATACCGGATGAAGAATTCAATTTACTGACTAAAGTGATGGTCAAGAAAAGAACGGGGAAAAAGAAGAATAAGCAAAAAGGTAAGAAGGTTGGAGGGAACAAAAAGTTTGTGTATAAAGTGAAGCCAGGGTCTGATCCATGTCTTGGGAGGCCAGGCAAGGGAAAAACCAAAAGGAAAATTACTGATCAGGATCATTCAATTATGAGAGATCGTAAGAGACAAAAATCACAAAATAGTAAGCGCTGTACAATATTAGTTAGAAATGCAGAGAAGAAGGTTGACTCGGAGAAAGATGGGTACACACCATATGCTGGGAAAAGAACTCTGTTAACATGGATGATTGATTCCGGAAGTGTCCCACTCAATTGTAGCATCCTGTACATAAATCCTCGGAAGCAACGTGTGCTACGCCAGGGGAGGATTACAAGGGATGGCATTCATTGTGACTGCTGTGATGAGATTGTCTCGATATCAGAATTTGAAGCTCATGCCAGAAGCGAACTCTTTGAACCCCTGAAAAACATTTACTTAGAGAGAGGAACTCCCCTACTGAATTGCCTGCTTGAATCATGGAATAAACAAGATGAATCTGAACGAAAAGGTTTCCATTTCATCAATATCAATTCTGAAGACCCCAATGACGATACATGTGGGATTTGTGGAGATGGAGGGGACTTGGTTTGCTGTGATAGCTGTCCTTCAACATTCCATCAAAGCTGCTTGGATATAAAGAATTTTCCTTCAGGTGACTGGAACTGCTTTTATTGCTGTTGTAAGTTTTGTGGATTAGTTGGTGGGAGCACACATGAGAGGAAGGATGATGGTGATATAGCCATGTCTGCATTAATTACATGTCATTTGTGTGAGGAAAAGTATCACAAGGACTGTTCTAGGGCAAAGGACGCGAAAATGGAGATTCTACATGAGTCAGGTTTTTGTGAAGATAAGTGCCAACAGTTATTTAAGGGGCTGGAGATGCTTCTTGGGGTTAAACATGTAATGGAAGATGGATTTTCATGGACCCTTTATCGCCGTTCAGACGTCTTCTTCAATGGCTCTGAGATTAAAACTGAAGTGATTGAATCTAATTCTAAGCTAGCTATTGCATTACTCATCATGGATGAGTGTTTTTTGCCCATAATTGATCACAGAAGTGGGATCAATATGATTCACAGTGTTATATATAACCGTGGGTCAAACATCAACCGGCTGAACTATAGTGGGTTTTTTACTGCAATTCTGGAGAGAGGTGACGAGATCATGTCTGCAGCATCTCTAAGGATCCGGGGAAATCAATTAGCAGAGATGCCATTTATTGGGACTCGTTATTTGTACAGGCGTCAAGGGATGTGTCGTCGACTCCTCTATGGTATTGAATCTGCTCTTCGCGTGCTAAATGTGGAGCTGCTGGTCATTCCTGCTGTTTCCGAACTGAGAAAAACATGGACTACAGTTTTTGGTTTCGTGCCACTCGATGTAACAAACTTAAGCAAAATAAAGAACAAGAATTTGATGGTGTTCCCAAGCGTTGATATGTTGCAGAAAAAGATAATGAACCTTTCTAATGGTGAAAGTGTGGATTGTCAACTACGGGATTGCCATTCATTTGCTGGCATGACAAACAATTTTGATCAGTCTAATAGTTTGAATCAGGGATGTTCCTCTGCATTGGATCCAAAGGTTCGCGAAGTTCCTGAACTTATTGAACGTGGTATCAGTGATCTGGAAGCAATATCTGCCCATGTTTCCATCAATGACACACTTGACCATGAAAATAAAAATATTTGTCAAATCAAACCTGATTCTTTTCAGAGTGATCTGAAGGACGACATAAATGGAGCACATGTGAAAGACACTCCAATTTTTGTTCATCAGATTTCCAATTCCTGTTGTGAACCTCAAAGCAAAGACGAGAAGGAGACAGGCATTGCTTCTCAATGCAACAAGTATTGTAAATCTGTGAAAGAACTGAAAATCCACTGTGAGAAGAGAGATGACATTGTTGAAAACAACGTCAATGGTTGTCTGGATTCTACTAAACACATTGGACCAAATATTGCAGTCAAAATTGCAAATCATGCAGAGGAGTTTGAAGATCCAGTCGACAACATCTGGTGTGATTTAGCGTGCAATAATCAGCCTTCTAGTGATGCCACGCATGTTGTGGATCCTGATTCGCTAGATGTACAAAGCATTGGTTGTGCTTCTGATTTACATATACCCAGCAATCAGGAGTGCACAGATAACCAATTACACGTTGAGCATTTATGTCTAGAGTCTACACAGGAATGTGGTGAACCTGCTAAATGTTGCAGTTCCCAATTATCCCCAAGTGTTGTGTCTCTTCTGAAATAG 3438 0.4052 MREGLRSGKALAKSVPEKLEINDVVLNGVEGLCLVSSRLGYKEELLSRGTEKTQIQHVKKDCTSHEEMASGNCVHSFVNKKGRKSSSRGNACRQNENKEKHGDLSGEGQFSGRVLRSKTKCNLPRGEEEAKSIPEESEDILVTKRKMKAEKEDDDFVDVIVDKNKTIVKIESIDSLGTGHGLTNKSQRKRWKSAAFNTEEHKQFLKKVNQQSSGKCQLSSNLKGSNGLVKVVSREKVIQNRRKCSNMEVNMKNNATPENKQTQEVYRCSPKHSKVKSSSPAKKAPTRKQLLREKIAEILFAAGWKVDYRPRNNKDYFDAVYVSLDRRTHWSITLAYRRLKQHYEAGDGEDKVYKPGFKFTPIPDEEFNLLTKVMVKKRTGKKKNKQKGKKVGGNKKFVYKVKPGSDPCLGRPGKGKTKRKITDQDHSIMRDRKRQKSQNSKRCTILVRNAEKKVDSEKDGYTPYAGKRTLLTWMIDSGSVPLNCSILYINPRKQRVLRQGRITRDGIHCDCCDEIVSISEFEAHARSELFEPLKNIYLERGTPLLNCLLESWNKQDESERKGFHFININSEDPNDDTCGICGDGGDLVCCDSCPSTFHQSCLDIKNFPSGDWNCFYCCCKFCGLVGGSTHERKDDGDIAMSALITCHLCEEKYHKDCSRAKDAKMEILHESGFCEDKCQQLFKGLEMLLGVKHVMEDGFSWTLYRRSDVFFNGSEIKTEVIESNSKLAIALLIMDECFLPIIDHRSGINMIHSVIYNRGSNINRLNYSGFFTAILERGDEIMSAASLRIRGNQLAEMPFIGTRYLYRRQGMCRRLLYGIESALRVLNVELLVIPAVSELRKTWTTVFGFVPLDVTNLSKIKNKNLMVFPSVDMLQKKIMNLSNGESVDCQLRDCHSFAGMTNNFDQSNSLNQGCSSALDPKVREVPELIERGISDLEAISAHVSINDTLDHENKNICQIKPDSFQSDLKDDINGAHVKDTPIFVHQISNSCCEPQSKDEKETGIASQCNKYCKSVKELKIHCEKRDDIVENNVNGCLDSTKHIGPNIAVKIANHAEEFEDPVDNIWCDLACNNQPSSDATHVVDPDSLDVQSIGCASDLHIPSNQECTDNQLHVEHLCLESTQECGEPAKCCSSQLSPSVVSLLK* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00275 1145 SMART PHD_3 577 618 IPR001965 -
Pte15g00275 1145 SMART PHD_3 619 679 IPR001965 -
Pte15g00275 1145 MobiDBLite consensus disorder prediction 79 110 - -
Pte15g00275 1145 MobiDBLite consensus disorder prediction 412 434 - -
Pte15g00275 1145 Pfam Tify domain binding domain 500 550 IPR032308 -
Pte15g00275 1145 ProSiteProfiles Zinc finger PHD-type profile. 575 620 IPR019787 -
Pte15g00275 1145 MobiDBLite consensus disorder prediction 258 287 - -
Pte15g00275 1145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 688 IPR013083 -
Pte15g00275 1145 PANTHER PHD FINGER PROTEIN 12 262 1022 IPR042163 GO:0003714|GO:0045892
Pte15g00275 1145 MobiDBLite consensus disorder prediction 408 440 - -
Pte15g00275 1145 SUPERFAMILY FYVE/PHD zinc finger 568 623 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00275 Pte-Chr15 2001246 2007985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00275 288 879 PHD Transcription Factor Family AT5G36670 45.603 6.30e-179 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00275 - - qsu:112014053 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00275 15 2001246 2007985 Pte15g00275 15 2001246 2007985 RCT