Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00272 ATGGATAACCACCAGTCTTGCTCTCAAACCAAAACCATCGGTGGCCGACGAAGCTTGAAGAGGAAGCTGGAGCAAGATTTCAGGCAAGACGACGGCGGAGATCGAGTTCAAGCCGATCGAGAGGTTTTCGTGCTCGATCCTCATGAATCTCCTCTAGATCTGGTCCCTAAAGTTGCAGCTCAGGTTGAGATACTCAAGTCTACTTTATCCTCAACCAACGAGTCTGACCGTGCTGCGGCCAAGCGAGCTGTTCATTTCATCTCTGATCTCGCCAAGAACGAAGACGTCGTAAATGTTATAGTTGATTCCGGAGCTGTTCCTGCACTTGTACAACATTTACATGTGCCCGATGATGGCCCTCCTATGCCTCACGAGCATGAAGTGGAAAAGGGGAGTGCTTTTGCTCTGGGGCTTCTTGCAGTTAAACCAGAGTATCAACACCATATTGTTGATGCTGGAGCGTTACCCCATCTTGTCGGTTTGTTGAAGAGGCACAAAAATGGGGCTTATTCTCGGGCACTTGGTGGTGTTATAAGGAGAGCGGCCGATGCAATTACTAACCTTGCTCACGAGAATAGCATCATTAAAACACATGTCAGGATTGAAGGAGGTATCCCACCTCTAGTTGAATTGCTTGAGTATGCTGACACAAAGGTACAAAGGGCAGCTGCTGGTGCCTTAAGGACTCTTGCATTCAAGAATGACGAAAACAAAAATCAGATTGTGGAATGCAACGCATTACCCACACTCATATTAATGCTGAGATCTGATGATTCTGCCATACATTATGAAGCGGTTGGTGTAATTGGGAATCTGGTTCATTCTTCTCCACTCATCAAGAGGGAAGTTCTTCTTGCTGGGGCTTTGCAACCTGTTATAGGATTACTTCGTTCCCCCTGTTATGAAAGCCAACGAGAAGCTGCTTTACTATTGGGTCAATTTGCTGCAACTGACACGGATTGCAAGGTGCACATTGTTCAAAGAGGTGCTATCCAGCCACTTATTGATATGCTTCGATCTCCAGATGCACAGTTAAGAGAGATGTCGGCATTTGCACTCGGCAGACTGGCTCAGGATACACACAACCAAGCTGGTATTGCCCAAAATGGGGGTATAGAGCCTTTACTTGGGCTTATTAGCTCAAAAAATGGATCTCTGCAACACAATGCTGCATTTACTCTCTATGGTCTTGCTGACAATGAGGATAATGTCGCTGACATTATCAAGGTTGGTGGTGTTCAGAAACTCCAAGATGGAGAGTTCAATGTTCAACCTACTCGAGAGTGTGTTGCAAAGACATTAAAAAGGTTGGAGGAGAAAATCAATGGGCGGGTGCTGAAACATCTCTTATATCTGATGAGATTCTCAGAGAAGGCTGTGCAAAGGAGAGTTGCTCTTGCTCTAGCTCACTTTTGTGCTCCTGGGGATCGAAGAAGTATTTTCATCGACCATGAAGGGCTAGAGTTGCTTCTTGGTCTTCTGGATTCTGCAAATCTGACACAGAAACGGGATGCTTCATTGGCCCTACACAAGCTGGCTACCAAAGCCACTTCACACTCTCCCATTGATGCTGCACCTCCCTCACCAACTCCTCAGGTCTACTTGGGGGAGCAATATGTGAACAATCCTACACTTTCTGATGTTACCTTTTTGGTTGAAGGCAAGCGATTCTTTGCTCATCGAATTTGTTTATTAGCTTCTTCTGATGCATTCCGTGCGATGTTTGATGGCGGTTATAGGGAGAAGGATGCCAAAGACATCGAGATTCCAAATATTAAATGGGAGGTTTTCGAATTGATGATGAGATTCTTATACACAGGATCAGCAAATGTCAATTTAGTTGTGGCTCAGGATCTCTTAAGAGCTGCTGACCAGTATCTTCTTGACGGTCTTAAGCGTCTTTGTGAGTATGTCATTGCTCAGGACATATCGGTGGATAATGTCTCCCTAATGTATGAACTTTCAGATGCCTTCAATGCTATGTCATTGAGGGAAGCATGCATACACTTCATATTGGAACAATTTGACAAGCTTAGTGCAAAACCCTGGTAG 2052 0.4508 MDNHQSCSQTKTIGGRRSLKRKLEQDFRQDDGGDRVQADREVFVLDPHESPLDLVPKVAAQVEILKSTLSSTNESDRAAAKRAVHFISDLAKNEDVVNVIVDSGAVPALVQHLHVPDDGPPMPHEHEVEKGSAFALGLLAVKPEYQHHIVDAGALPHLVGLLKRHKNGAYSRALGGVIRRAADAITNLAHENSIIKTHVRIEGGIPPLVELLEYADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSDDSAIHYEAVGVIGNLVHSSPLIKREVLLAGALQPVIGLLRSPCYESQREAALLLGQFAATDTDCKVHIVQRGAIQPLIDMLRSPDAQLREMSAFALGRLAQDTHNQAGIAQNGGIEPLLGLISSKNGSLQHNAAFTLYGLADNEDNVADIIKVGGVQKLQDGEFNVQPTRECVAKTLKRLEEKINGRVLKHLLYLMRFSEKAVQRRVALALAHFCAPGDRRSIFIDHEGLELLLGLLDSANLTQKRDASLALHKLATKATSHSPIDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFFAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIKWEVFELMMRFLYTGSANVNLVVAQDLLRAADQYLLDGLKRLCEYVIAQDISVDNVSLMYELSDAFNAMSLREACIHFILEQFDKLSAKPW* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00272 683 SMART BTB_4 546 643 IPR000210 GO:0005515
Pte15g00272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 153 193 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 474 514 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 192 232 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 276 316 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 93 141 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 318 358 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 142 190 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 234 274 IPR000225 GO:0005515
Pte15g00272 683 SMART arm_5 359 399 IPR000225 GO:0005515
Pte15g00272 683 SUPERFAMILY POZ domain 537 640 IPR011333 -
Pte15g00272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 203 238 IPR000225 GO:0005515
Pte15g00272 683 ProSiteProfiles BTB domain profile. 546 613 IPR000210 GO:0005515
Pte15g00272 683 MobiDBLite consensus disorder prediction 1 34 - -
Pte15g00272 683 Gene3D - 441 525 IPR011989 -
Pte15g00272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 245 272 IPR000225 GO:0005515
Pte15g00272 683 Gene3D - 358 440 IPR011989 -
Pte15g00272 683 Gene3D - 46 357 IPR011989 -
Pte15g00272 683 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 683 IPR044282 -
Pte15g00272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 412 IPR000225 GO:0005515
Pte15g00272 683 SUPERFAMILY ARM repeat 61 417 IPR016024 -
Pte15g00272 683 MobiDBLite consensus disorder prediction 17 34 - -
Pte15g00272 683 Pfam BTB/POZ domain 539 641 IPR000210 GO:0005515
Pte15g00272 683 Gene3D Potassium Channel Kv1.1; Chain A 526 673 IPR011333 -
Pte15g00272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 329 371 IPR000225 GO:0005515
Pte15g00272 683 Pfam Armadillo/beta-catenin-like repeat 234 273 IPR000225 GO:0005515
Pte15g00272 683 Pfam Armadillo/beta-catenin-like repeat 198 231 IPR000225 GO:0005515
Pte15g00272 683 Pfam Armadillo/beta-catenin-like repeat 319 357 IPR000225 GO:0005515
Pte15g00272 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 104 154 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00272 Pte-Chr15 1970833 1977098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00272 203 462 U-box Gene Family AT1G71020 28.676 2.03e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pte15g00272 BTB 3.4e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00272 - - sind:105165291 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00272 15 1970833 1977098 Pte15g00272 15 1970833 1977098 RCT