Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00252 ATGGCGTCAGTCGCCCTGAGAAATTCAGGTTCCAAGCGTCTGCTTCCATTTTCGACTCAAATCTACTCTTGCTGCCAAGGCTCAGTCATCTTGCACAACTCGTTACTCTCTGATTTGACTAATGGAAATGATAGGACCACTGTTAGCAATCCATGGTGGAGATTCATGGCCACTTTCACACGCACAAAACCTCATGTTAACGTGGGAACTATTGGACATGTTGACCATGGGAAAACTACTCTCACTGCAGCTATTACTAAGGTGCTTGCCGAAGAAGGAAAAGCCAAGGCTGTTGCTTTTGATGAAATTGACAAGGCCCCAGAGGAGAAAAAGAGAGGAATTACTATTGCCACGGCCCATGTGGAGTATGAAACTGCTAAGAGACATTATGCGCATGTGGACTGCCCTGGACATGCAGATTATGTTAAAAATATGATTACTGGAGCTGCCCAAATGGATGGTGGTATTCTTGTTGTATCTGCCCCAGATGGGCCAATGCCTCAAACTAAGGAACACATTCTTCTTGCTCGTCAAGTGGGTGTCCCTTCTCTTGTTTGTTTCCTCAATAAAGTTGATGCAGTTGATGACCCAGAGTTATTGGAGCTAGTGGAAATGGAGCTTCGTGAACTTCTTAGCTTCTACAAATTTCCTGGGGATGAAATTCCAATCATTCAGGGCTCGGCTTTGTCTGCTTTACAGGGTACTAATGATGAGATAGGAAGAAAAGCTATTCTGAAGTTAATGGATGCTGTAGATGAATACATTCCTGATCCTGTGCGTCAACTTGACAAGCCTTTCCTAATGCCAATAGAAGATGTATTCTCAATTCAGGGACGTGGAACTGTAGCCACTGGCCGGGTTGAACAAGGGACCATCAAAGTTGGCGAGGAAGTTGAGATTTTGGGTTTGATGCAGGGTCCTTTGAAAACAACAGTTACTGGTGTTGAAATGTTCAAGAAAATATTGGACCACGGACAAGCTGGTGATAATGTGGGTCTTCTTCTACGTGGTTTGAAGAGAGAAGATATCCAACGTGGTCAGGTTATTGCTAAACCTGGTTCTTTAAAGACGTACAAGAGATTTGAGGCCGAGATATATGTCCTCTCGAAGGATGAAGGTGGTCGCCACACTAGTTTCTTCTCGAACTACAAGCCTCAGTTCTACTTGAGGACTGCTGACATAACAGGAAGGATAGAACTGCCAGAAAGTGTTAAGATGGTTGTACCTGGGGACAATGTTACTGCTACCATTGAGCTTATTTCACCGGTTCCACTTGAATCAGGGCAAAGATTTGCTTTAAGAGAAGGTGGCAGAACAGTTGGGGCCGGTGTCGTGTCGAAAGTAATCACATAA 1353 0.4435 MASVALRNSGSKRLLPFSTQIYSCCQGSVILHNSLLSDLTNGNDRTTVSNPWWRFMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIQGSALSALQGTNDEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEILGLMQGPLKTTVTGVEMFKKILDHGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKRFEAEIYVLSKDEGGRHTSFFSNYKPQFYLRTADITGRIELPESVKMVVPGDNVTATIELISPVPLESGQRFALREGGRTVGAGVVSKVIT* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00252 450 FunFam Elongation factor Tu 55 258 - -
Pte15g00252 450 CDD EFTU_II 266 353 IPR033720 -
Pte15g00252 450 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 359 449 IPR009001 -
Pte15g00252 450 NCBIfam elongation factor Tu 56 449 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pte15g00252 450 CDD EF_Tu 64 258 IPR041709 -
Pte15g00252 450 Gene3D Translation factors 261 390 - -
Pte15g00252 450 PANTHER ELONGATION FACTOR TU-RELATED 59 449 - -
Pte15g00252 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 281 IPR027417 -
Pte15g00252 450 FunFam Elongation factor Tu 261 390 - -
Pte15g00252 450 NCBIfam small GTP-binding protein domain 66 203 IPR005225 GO:0005525
Pte15g00252 450 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 104 119 IPR031157 -
Pte15g00252 450 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 63 259 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 Hamap Elongation factor Tu [tuf]. 54 450 IPR004541 GO:0003746|GO:0005525|GO:0006414
Pte15g00252 450 PRINTS GTP-binding elongation factor signature 147 158 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 PRINTS GTP-binding elongation factor signature 184 193 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 PRINTS GTP-binding elongation factor signature 131 141 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 PRINTS GTP-binding elongation factor signature 67 80 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 PRINTS GTP-binding elongation factor signature 111 119 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 Pfam Elongation factor Tu GTP binding domain 63 256 IPR000795 GO:0003924|GO:0005525
Pte15g00252 450 Gene3D Translation factors 394 449 - -
Pte15g00252 450 SUPERFAMILY Translation proteins 260 355 IPR009000 -
Pte15g00252 450 CDD EFTU_III 356 445 - -
Pte15g00252 450 Pfam Elongation factor Tu domain 2 280 349 IPR004161 GO:0005525
Pte15g00252 450 Gene3D - 56 258 IPR027417 -
Pte15g00252 450 Pfam Elongation factor Tu C-terminal domain 355 448 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00252 Pte-Chr15 1832610 1836993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00252 61 448 Eukaryotic Initiation Factors Gene Family AT5G60390 30.345 1.31e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00252 K02358 - sly:101268512 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00252 15 1832610 1836993 Pte15g00252 15 1832610 1836993 RCT