Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00235 ATGGCGGAAGGTAAGAAAGAGAGGAAACCGGACGACGAGAGTGTCAAACTTTTCGTAGGTCAAGTACCGAAGAATGCGACGGAAGCTCAGTTGCTTGCAATGTTCAAGGAGTTTGCGTTGGTTGACGAGGTCAACATCATTAAGGATAAGATCACCCGTGCTTCCCGTGGGTGTTGCTTTGTAATATGCCCGTCGAGGGAAGAGGCTGATAAGGCGGTCAATGCGTGTCATAATAAGAAAACGCTCCCCGGGGCAGCTAGTCCGTTGCAAGTGAGATATGCAGATGGAGAATTGGAAAGGCTAGAGCACAAGCTTTTTATTGGCATGCTGCCTAAGAATGTTTCTGAATCAGAAGTCCGGTCCCTCTTCTCAAAGCATGGAACAATAAAGGACCTACAAATTTTAAGAGGTGCTCAGCAAACAAGTAAAGGCTGTGCGTTTTTGAAGTACGAAACCAAAGAACAAGCCCTTGCTGCCCTGGATGCAATTAATGGAAAACATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACTGAAAAGGAAAGACAAGCTCGGAGAGCTCAAAAAGCACAATCGAAGGCATCTGATATGCCAAATACTGAATTGCAACATCCATCAATATTTGGAGCCATGTCAATGAGTTATGTTCCCCCTTATAATGGATATGGTTATCAGACTCCTGGGCCTTACGGAATACTGCCGTACCGCATGCCACCCATGCAGAACCAAACTGGTTTTCATAATATGATCCCTCATGTGCATCAAGGAAATGCACCACGTCCCGACCTTACTCCTACCATGAGCACTCAAAATTACGGTGTCCCCCCTGCAAATTTTGTTGGTTCCTATCCTCCAGTTCCAGGTCTGCAGCATCCTATGCCTTATCCTGGTGGCATGATAAGTCCCAGACCTATGGGTGGTTCACCTGGTTCCATGCCTCCTGGAGATGTTCATAGTGGCTCAGCATCTTCAGGCACCAGTAGAAGTTCTGGGGGTCAGATTGAAGGTCCACCTGGCGCTAATTTATTTATTTATCACATACCTCAAGAATATGGAGATCACGAGCTTGCTAATGCTTTTCAACAATTTGGTAGGGTCTTGAGTGCTAAAGTTTTTGTGGACAAAGCAACTGGTGCGAGTAAATGTTTTGGATTTGTGAGTTTTGATTCACCGGATGCTGCTCAATATGCCATTAGTGGCATGAATGGGTATCAATTATGTGGTAAGAAATTAAAGGTTCAGCTCAAGAGGGACAACAAATAA 1278 0.4499 MAEGKKERKPDDESVKLFVGQVPKNATEAQLLAMFKEFALVDEVNIIKDKITRASRGCCFVICPSREEADKAVNACHNKKTLPGAASPLQVRYADGELERLEHKLFIGMLPKNVSESEVRSLFSKHGTIKDLQILRGAQQTSKGCAFLKYETKEQALAALDAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSKASDMPNTELQHPSIFGAMSMSYVPPYNGYGYQTPGPYGILPYRMPPMQNQTGFHNMIPHVHQGNAPRPDLTPTMSTQNYGVPPANFVGSYPPVPGLQHPMPYPGGMISPRPMGGSPGSMPPGDVHSGSASSGTSRSSGGQIEGPPGANLFIYHIPQEYGDHELANAFQQFGRVLSAKVFVDKATGASKCFGFVSFDSPDAAQYAISGMNGYQLCGKKLKVQLKRDNK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00235 425 CDD RRM1_2_CELF1-6_like 104 179 - -
Pte15g00235 425 Gene3D - 320 422 IPR012677 -
Pte15g00235 425 CDD RRM3_CELF1-6 347 419 - -
Pte15g00235 425 FunFam RNA-binding protein BRN1 2 99 - -
Pte15g00235 425 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Pte15g00235 425 Gene3D - 2 99 IPR012677 -
Pte15g00235 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pte15g00235 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Pte15g00235 425 SMART rrm1_1 346 419 IPR000504 GO:0003723
Pte15g00235 425 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pte15g00235 425 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pte15g00235 425 FunFam RNA-binding protein BRN1 313 422 - -
Pte15g00235 425 MobiDBLite consensus disorder prediction 185 206 - -
Pte15g00235 425 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Pte15g00235 425 CDD RRM1_2_CELF1-6_like 16 92 - -
Pte15g00235 425 Gene3D - 100 192 IPR012677 -
Pte15g00235 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pte15g00235 425 PANTHER OS02G0815200 PROTEIN 99 423 - -
Pte15g00235 425 MobiDBLite consensus disorder prediction 322 339 - -
Pte15g00235 425 SUPERFAMILY RNA-binding domain, RBD 103 423 IPR035979 GO:0003676
Pte15g00235 425 MobiDBLite consensus disorder prediction 303 340 - -
Pte15g00235 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Pte15g00235 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pte15g00235 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Pte15g00235 425 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pte15g00235 425 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pte15g00235 425 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pte15g00235 425 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00235 Pte-Chr15 1738756 1742985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00235 344 425 Eukaryotic Initiation Factors Gene Family AT1G49760 37.647 2.07e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00235 K13207 - mnt:21403340 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00235 15 1738756 1742985 Pte15g00235 15 1738756 1742985 RCT