Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00228 ATGAAGGCAAAGTATGGGAGCATTTCTAATAAAGGTTTCGAGATGAAGCAAGGATATAGTATGAAATCAAGGTCAAACAGAGTTGTTCAGGATCTCACGGTGGCAGCAGATGGTTTACGGCAAAGTTGTTGGGCTAATATGCCTCCAGAGCTTTTGAGAGATGTGCTTATGAGGATAGAGGCATCTGAAGATGCATGGCCTGCGCGAAAACATGTGGTTGCCTGTGCTGGTGTTTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTAAAACCTCCACAAGCATCGGGCAAGTTGACATTCCCATTCTCCTTGAGGCAGTTGGCAGCTTCAAATGATGATGGAAAGTTTCTCCTTACTGCAAGTAAGATTAGACGCCCAACTCATAGAGACTATATCATTTCGGCAAATTGTGATAACATCACAAGAGGGAGTAGTGCATATATGGGAAAGTTAAGATCAAATTTTTTGGCGACCAAATTTACTATTCATGGGGCAACACCTCGGATTAGTGGAGCCAAAGTCTCCAAATCACTATCCACGGGGTTGATTTCTTTAAAGCAAGTCTTTCCTAGTGGACCTGGTGGAAACTGTCTTGTTGCACATATCTCCTATAGGCTGAATGTCTTGGGTTCAAGGGGGCCGAGGATAATGCAGTGCACCATGGATGCAATTCCTGCCTCGACTGTTGAGCAAGATGGTGTGGGTCGTACACCAACTGGAGTCGTGCATAACAACACTCTGGATGCGTCCCCTTCCATTGCTTTATCCAGATCAAAATCAACTAGTGCTGAGAATTTTCAGCCTGGACACTCATCTGATCAAAATGATGAAAAGCTGGTTCTGCGAAATAAGGCTCCTAGGTGGCATGAACAACTACAATGCTGGTGTCTGAATTTTATTGGCCGGATTACAGTGGCTTCGGTTAAGAATTTTCAGCTGGTAGCCCTTTCAAGGAATGGACACGCCCAAGACAACGCGACTCTTCAATTTGGAAAAGTTGGGAAGGATGTGTTCACCATGGATTACCAGTATCCAGTCTCAGCTTTCGAGGCATTTGCAATATGTCTGAGCAGCTTTGACACAAAGATTGCTTGTGAATGA 1104 0.4438 MKAKYGSISNKGFEMKQGYSMKSRSNRVVQDLTVAADGLRQSCWANMPPELLRDVLMRIEASEDAWPARKHVVACAGVCRSWREIMKEIVKPPQASGKLTFPFSLRQLAASNDDGKFLLTASKIRRPTHRDYIISANCDNITRGSSAYMGKLRSNFLATKFTIHGATPRISGAKVSKSLSTGLISLKQVFPSGPGGNCLVAHISYRLNVLGSRGPRIMQCTMDAIPASTVEQDGVGRTPTGVVHNNTLDASPSIALSRSKSTSAENFQPGHSSDQNDEKLVLRNKAPRWHEQLQCWCLNFIGRITVASVKNFQLVALSRNGHAQDNATLQFGKVGKDVFTMDYQYPVSAFEAFAICLSSFDTKIACE* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00228 367 CDD F-box_AtTLP-like 44 88 - -
Pte15g00228 367 ProSitePatterns Tub family signature 2. 352 367 IPR018066 -
Pte15g00228 367 Pfam Tub family 105 362 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 197 224 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 345 367 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 132 148 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 148 172 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 324 343 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Pte15g00228 367 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Pte15g00228 367 PANTHER TUBBY-RELATED 29 106 - -
Pte15g00228 367 MobiDBLite consensus disorder prediction 259 275 - -
Pte15g00228 367 Pfam F-box domain 44 90 IPR001810 GO:0005515
Pte15g00228 367 SUPERFAMILY Tubby C-terminal domain-like 88 367 IPR025659 -
Pte15g00228 367 SUPERFAMILY F-box domain 37 87 IPR036047 GO:0005515
Pte15g00228 367 MobiDBLite consensus disorder prediction 259 278 - -
Pte15g00228 367 Gene3D Tubby Protein; Chain A 84 367 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00228 Pte-Chr15 1693949 1696159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00228 1 368 TUB Transcription Factor Family AT2G47900 62.344 2.60e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte15g00228 Tub 6.2e-83 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00228 K19600 - qsa:O6P43_007114 520.005