Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00216 ATGGAATTGTACGGTCGGAATTCTGGAGGAAATGGGTCTCAATCCGGTGCTCAATCCGAATGGAGCCCAGTCCCTGCTGAGACTGGGCTTGAAGATTCCATGTCGCAATTGGGGCTCGGTAACAGCCTGTCGTACCCAGAAAGACATGGTGTTCCTCATTGCGTATTTTACATGCGAACTGGGTACTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGATTGTAGAAGCTGTTAGAACCACAGGGGAGTACCCAGAACGAGTAGGGGAACCCGAATGTCAGTATTATTTAAAAACTGGAGCCTGTAAATTTGGTGCGTCCTGCAAGTTTCACCATCCAAAACATAGAGGCGGATATTTAAATCAATCTGCAGTAAATATTTTGGGTTACCCATTACGACCGGGTGAAAAAGAATGCTCCTACTATTTGAAAACGGGGCGCTGCAAATTTGCTCTAACTTGTAAATTCCATCATCCTCAACCAGCTGGATCATTGATACCGGCATCTGCACCTCAGTTTTATTCAGCGGTGCAGTCTCCTTCTGTTCCTCTGCCCGAACAGTATGGAGCTTCTAATAGTTTGAGGGTGGCTAGGCCTCCTATATTGACTGGTTCATACATGCAAGGAGCATATGGCCCTGTGCTTCTTTCTCCTGGTGTTGTTCCTATTCCTGGATGGAATCCATATTCGTCACCTCTCAGCCCTGTGTTATCGCCTGATGCCCAAAATGCCGCTGGGGCTACTTCTCTTTATGGGATGACCCAAGTCTCTTCAACTCCAACATTTGGTAGAGGACATACTCCAGTTTCTTATGCTGGCCCTTCCAGTAGTAGCCAGAAGGAACAAGTTTTTCCTGAGAGACCTGGTGAACCTGAATGTCAGTATTACATGAGAACAGGGGATTGTAAATTTGGACTTTCCTGTCGTTTCCATCATCCTCAGGATCGGATCATCACAAGTCCAATGCTCAGCCCCTTAGGTCTTCCCCTGCGTCCGGGAGCGCAACCATGCGCATTTTACATGCAAAATGGACTATGCAAATTTGGACCAACTTGCAAATTTGACCACCCAGTTGGGACAGTAAGATACAGTCCATCAGCGTCGTCTCTTGATTTTCCAGTTACTCCTTTAGTTGGATCTCTATTATCTACCTTGGCTCCTTCATCAACTGCAGAGTTTCGTCCTGAACTGATCTCCAGGTCCAAAAAGGAATCCTATTCAACAAGAATGTCTTCTACTGGGAATACATCCAGTACTCCAGTCAGTTTGATTTTCTCCCAAAGTGGGCCTGTCTCTTTGTCCGATGTGCAACTCTCTAATCCAAGTTCTGCACCTAAAACTAGAAGCACAAGACAAGGTGAGCTACGCAGATCAAGCTAA 1398 0.4642 MELYGRNSGGNGSQSGAQSEWSPVPAETGLEDSMSQLGLGNSLSYPERHGVPHCVFYMRTGYCGYGSRCRYNHPRDRAAIVEAVRTTGEYPERVGEPECQYYLKTGACKFGASCKFHHPKHRGGYLNQSAVNILGYPLRPGEKECSYYLKTGRCKFALTCKFHHPQPAGSLIPASAPQFYSAVQSPSVPLPEQYGASNSLRVARPPILTGSYMQGAYGPVLLSPGVVPIPGWNPYSSPLSPVLSPDAQNAAGATSLYGMTQVSSTPTFGRGHTPVSYAGPSSSSQKEQVFPERPGEPECQYYMRTGDCKFGLSCRFHHPQDRIITSPMLSPLGLPLRPGAQPCAFYMQNGLCKFGPTCKFDHPVGTVRYSPSASSLDFPVTPLVGSLLSTLAPSSTAEFRPELISRSKKESYSTRMSSTGNTSSTPVSLIFSQSGPVSLSDVQLSNPSSAPKTRSTRQGELRRSS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00216 465 ProSiteProfiles Zinc finger C3H1-type profile. 337 365 IPR000571 GO:0046872
Pte15g00216 465 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Pte15g00216 465 MobiDBLite consensus disorder prediction 410 455 - -
Pte15g00216 465 MobiDBLite consensus disorder prediction 268 293 - -
Pte15g00216 465 MobiDBLite consensus disorder prediction 7 22 - -
Pte15g00216 465 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pte15g00216 465 SMART c3hfinal6 337 364 IPR000571 GO:0046872
Pte15g00216 465 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Pte15g00216 465 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Pte15g00216 465 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pte15g00216 465 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Pte15g00216 465 Gene3D - 291 375 - -
Pte15g00216 465 Gene3D - 46 128 - -
Pte15g00216 465 MobiDBLite consensus disorder prediction 268 289 - -
Pte15g00216 465 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pte15g00216 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 341 363 IPR000571 GO:0046872
Pte15g00216 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Pte15g00216 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 75 IPR000571 GO:0046872
Pte15g00216 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Pte15g00216 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 320 IPR000571 GO:0046872
Pte15g00216 465 SUPERFAMILY CCCH zinc finger 97 121 IPR036855 GO:0046872
Pte15g00216 465 Gene3D - 129 172 - -
Pte15g00216 465 PANTHER PROTEIN PHOSPHATASE RELATED 36 382 - -
Pte15g00216 465 MobiDBLite consensus disorder prediction 1 33 - -
Pte15g00216 465 SUPERFAMILY CCCH zinc finger 297 322 IPR036855 GO:0046872
Pte15g00216 465 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Pte15g00216 465 MobiDBLite consensus disorder prediction 399 465 - -
Pte15g00216 465 SUPERFAMILY CCCH zinc finger 49 77 IPR036855 GO:0046872
Pte15g00216 465 SUPERFAMILY CCCH zinc finger 340 368 IPR036855 GO:0046872
Pte15g00216 465 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00216 Pte-Chr15 1621817 1625429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00216 1 414 C2H2 Transcription Factor Family AT5G18550 48.055 1.03e-127 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte15g00216 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00216 - - qsa:O6P43_007128 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00216 15 1621817 1625429 Pte15g00216 15 1621817 1625429 RCT