Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00213 ATGTCAAATATGTCAGGTGATGAAGGAAGTTTCTCGTCTGGGACTGGTGAAGAAGTCCACCAACAGAAGCAGGAGAACCTGCAGCTACAAGATCACTTCCATGGCTCAAACTCAGGACCCTCTGGGGCAAGCAACAATCCCAGCGCTGAAGTTGTTGCTTTATCACCCAACACGCTGATGGCGACCAATAGGTTTGTGTGTGAGATATGCAATAAAGGTTTCCAGAGGGACCAAAATCTTCAGTTGCATCGCAGAGGTCATAATCTTCCATGGAAGCTCAAACAAAGAACGACCACTGAGGTCAAAAAACGCGTCTATGTATGCCCGGAGCCATCATGCGTCCACCACAACCCAGCTCGTGCCTTGGGAGACTTAACTGGGATTAAGAAGCACTATAGCAGGAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAGAAATATGCTGTTCAGTCTGATTGGAAGGCCCATCAAAAGACTTGTGGTACCAGAGAATATAAATGCGACTGCGGCACCATATTTTCCAGGAGAGACAGTTTTATCACCCACAGAGCTTTCTGTGATGCATTGGCTGAAGAAAACAACAAAGTGAACCAGGGACTTACAAACACCATTTCATCAGGCATACAAAACCAAATGTCGGATCTGATGCCTTCAGTGCCCATGAATACCAGTGCAACTGGACTTCCTGAATACAACAACTTTGACCCCAAGAATCCACTCAAGTCAATTCCTCAAGAACTTGTTCCAATATCTTTCAAGTCGGCGATTAGCGGGGGCATGTTCTCCACTCCTTCAGCTACATTGTATGGCGGTCCTCGGGGTATGTCATCCTCCACCTCTAGCCTACAACTCAGCCCCAACAACTCATCCGGCTTCAATTATCTCCAAGATGGCAAAAATGGTGGCCTGATTTCAGGGTCTGCTGCTCAAATGTCTGCAACGGCTTTGTTGCAGAAAGCAGCCCAAATGGGTGCGACAGCAAGTAACAGCATGAATTCTCCAATGATGCAGAAGAGTTATGTGAGTACTATGGCTGGTCCAGACCATGTATCTTCTGCTAGACCGCCATTGATTTCGGGCGGCACCCAACAACATGAGACTTTGTATGAACACTTCCAACCACAATCTGATCAATCCAATATGATAACAGGTGGGGTTGGGGCTTTCTCCAATCAACTCCTACAGAGAGGCCAGCAAGGAATCTCGCATTTATTTGAGACAAATGCAACCGGCTCCCCAGTGAACACTATGCAAATGTTCAATGAAATGTTCATGAACAGCGACCATAACCAAACTTTCATGAAGAACATGGATCATCGGGAGGATAATAACAACAACCTTAGTTTGCTTCATGCACGAACTGCAACAGAGAGAAATTTATCGGGGCCGCCAAGTTATAGAGGGAGTGCTGACATGACAACTGTTGACTTCTTGGGTGTTGGAGGATCAAGAACTGCAAATTTGCATGAACAACATCATCAGCAACAAAGGATGGATCAGCAGCTGGAAGTAATGGCTCAGCAGAGGTTGCCACTCACGAATGCATTTCACCACCAACTTTCTCATGGAGAATCAACGCTAGGAAACCAATTTGGGACATATGAGCACTGA 1620 0.4605 MSNMSGDEGSFSSGTGEEVHQQKQENLQLQDHFHGSNSGPSGASNNPSAEVVALSPNTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKVNQGLTNTISSGIQNQMSDLMPSVPMNTSATGLPEYNNFDPKNPLKSIPQELVPISFKSAISGGMFSTPSATLYGGPRGMSSSTSSLQLSPNNSSGFNYLQDGKNGGLISGSAAQMSATALLQKAAQMGATASNSMNSPMMQKSYVSTMAGPDHVSSARPPLISGGTQQHETLYEHFQPQSDQSNMITGGVGAFSNQLLQRGQQGISHLFETNATGSPVNTMQMFNEMFMNSDHNQTFMKNMDHREDNNNNLSLLHARTATERNLSGPPSYRGSADMTTVDFLGVGGSRTANLHEQHHQQQRMDQQLEVMAQQRLPLTNAFHHQLSHGESTLGNQFGTYEH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00213 539 Gene3D Classic Zinc Finger 119 199 - -
Pte15g00213 539 Pfam Zinc finger, C2H2 type 65 87 IPR013087 -
Pte15g00213 539 SMART c2h2final6 141 161 IPR013087 -
Pte15g00213 539 SMART c2h2final6 106 136 IPR013087 -
Pte15g00213 539 SMART c2h2final6 65 87 IPR013087 -
Pte15g00213 539 MobiDBLite consensus disorder prediction 1 26 - -
Pte15g00213 539 FunFam protein indeterminate-domain 12-like 44 112 - -
Pte15g00213 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Pte15g00213 539 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Pte15g00213 539 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Pte15g00213 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 506 IPR031140 -
Pte15g00213 539 FunFam protein indeterminate-domain 5, chloroplastic-like 119 198 - -
Pte15g00213 539 Gene3D Classic Zinc Finger 41 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00213 Pte-Chr15 1593718 1596208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00213 46 331 IDZ Gene Family AT3G50700 55.375 2.10e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g00213 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00213 - - qsa:O6P43_010738 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00213 15 1593718 1596208 Pte15g00213 15 1593718 1596208 RCT