Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00201 ATGAGTAGCCGTTCTAGCAGGACCATCTACGTGGGAAACCTCCCGGGTGATATTCGCGAGAGAGAAGTGGAAGACTTGTTTTATAAGTACGGACCCATAAGCCACATTGACCTCAAGGTTCCTCCAAGACCCCCAGGTTATGCATTTATTGAGTTTGAAGATGCTGAAGACGCTGAAGAAGCAATCCGCGGTCGTGATGGATATGATTTTGATGGCCAACGTTTAAGGGTAGAGCCTGCACATGGCGGGCGTGGTCATTCCTCTTCGAGAGACCGTTATAGCAGTCATAGCAGTGGTCGTGCTCCTCGTGGTGGAGTATCAAGGCGCTCAGAATATCGTGTTTTAGTTACTGGATTGCCTTCTTCTGCCTCTTGGCAAGATCTTAAGGATCACATGAGGAAGGCCGGAGGGGATGTTTGCTTCTCCCAAGTTTTTCGTGATGGAAATGGTATGTTCCACCTGATGAATTCCCTAGTTAATATTGAATGTTTGAGGAAGCGCTGGAATGGAGATTCCTGCACATGGATAATGTGA 534 0.4757 MSSRSSRTIYVGNLPGDIREREVEDLFYKYGPISHIDLKVPPRPPGYAFIEFEDAEDAEEAIRGRDGYDFDGQRLRVEPAHGGRGHSSSRDRYSSHSSGRAPRGGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGGDVCFSQVFRDGNGMFHLMNSLVNIECLRKRWNGDSCTWIM* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00201 177 Gene3D - 111 160 IPR012677 -
Pte15g00201 177 SUPERFAMILY RNA-binding domain, RBD 5 147 IPR035979 GO:0003676
Pte15g00201 177 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Pte15g00201 177 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 111 - -
Pte15g00201 177 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Pte15g00201 177 MobiDBLite consensus disorder prediction 72 109 - -
Pte15g00201 177 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 4 148 - -
Pte15g00201 177 MobiDBLite consensus disorder prediction 72 97 - -
Pte15g00201 177 Gene3D - 1 109 IPR012677 -
Pte15g00201 177 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00201 Pte-Chr15 1434396 1437695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00201 8 78 Eukaryotic Initiation Factors Gene Family AT3G11400 32.432 2.64e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00201 K12890 - qsa:O6P43_010775 241.506