Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00189 ATGGTTTCGCTGAAACTCCAGAAGCGGCTTGCCGCCAGCGTCCTCAAGTGCGGCAGAGGCAAAGTTTGGCTAGACCCTAATGAAGTCAATGAAATCTCCATGGCCAACTCTCGCCAAAACATAAGGAAGTTGGTGAAGGATGGTTTCATTATCAGGAAGCCTACTAAGATTCATTCTCGTTCACGTGCTAGGCGCATGAAGGAGGCGAAGAGGAAGGGGCGTCACTCTGGATACGGTAAACGTAAGGGTACCAGGGAAGCTAGACTGCCTACTAAAATCCTTTGGATGAGAAGGATGCGTGTCTTGAGGCGCTTGCTCCGCAAGTATAGAGAAGCGAAGAAAATTGACAAGCACATGTATCATGACATGTATATGAAGGTCAAGGGTAATGTTTTCAAGAACAAGAGAGTCCTCATGGAGAGCATCCACAAATCAAAGGCTGAGAAGCAAAGAGAAAAGACTCTGTCTGATCAGTTTGAGGCTAAGCGTGCTAAGAACAAGGCCAGCAGAGAGAGAAAGTTTGCTAGAAGAGAAGAACGCTTGGCTCAGGGTCCTGGGGAGAAATTACCGACAGCAGCCACTACTGCACTGACCTCAGCTGCGGCTCAACCAGCACAAGTGTCAAAGAAATCAAAGAAGTGA 642 0.4782 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKQREKTLSDQFEAKRAKNKASRERKFARREERLAQGPGEKLPTAATTALTSAAAQPAQVSKKSKK* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00189 213 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Pte15g00189 213 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Pte15g00189 213 Gene3D - 57 190 - -
Pte15g00189 213 MobiDBLite consensus disorder prediction 144 213 - -
Pte15g00189 213 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pte15g00189 213 MobiDBLite consensus disorder prediction 57 85 - -
Pte15g00189 213 MobiDBLite consensus disorder prediction 144 184 - -
Pte15g00189 213 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Pte15g00189 213 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Pte15g00189 213 MobiDBLite consensus disorder prediction 192 213 - -
Pte15g00189 213 FunFam Ribosomal protein L19 1 56 - -
Pte15g00189 213 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Pte15g00189 213 MobiDBLite consensus disorder prediction 57 79 - -
Pte15g00189 213 FunFam Ribosomal protein L19 57 194 - -
Pte15g00189 213 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pte15g00189 213 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00189 Pte-Chr15 1372708 1374363 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00189 1 214 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.112 6.03e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00189 K02885 - mnt:21390884 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00189 15 1372708 1374363 Pte15g00189 15 1372708 1374363 RCT