Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00143 ATGGCCTCTATTTTAGGCGTCTCATCTATATACCAGTCTCCAACTCTGGAGCTCTACAAAAGGATCAATAATACTTCAACAACAACCACGACGGCGGGGCCGACGAATGGTGCGGCTTCTGTTTCGCTTCAGTTGCCAGACAACAAGCCTCATATCAGCAATGCTCGTAGAGCTCACATTGTCAGCTGTGGTATCAGCCACAAGAAGGGTATAAAATCCAGGGTGAATTTCATTCCATCTGCAACTGCCACACCTAATTCCTGGGTTTTGAGTGAGGAGGCATTCAAGGGTCTGGGTCAAGGGTTTTCTGGCAAAGACCCATTGGATGACATTAGCGAAGGCGGTGACTATGAGTCTGAGTCTGAACCTGAACCTGAACCTGATACCAAATTTATGTCCGCGTCCACAGATGATGATCAGCTTGATGTTGCCAAGCTGGATTTGCCTCCCCGTCTTGTTGACTCTCTTCAGAAACGGGGGATTACTCAGCTTTTTCCTATTCAAAGAGCTGTGTTAGTCCCTGCACTAGAAGGACGAGATATTATAGCTCGTGCAAAGACTGGAACAGGAAAAACGTTAGCGTTTGGGATCCCGATCCTTAAGCGCCTCAGTGAAGATGACAATGGACGGGGTTTTCAAAGGCGGTCTGGTCGACTTCCAAGACTACTAGTTCTTGCACCTACTAGAGAGTTAGCAAAGCAGGTAGAGAAAGAGATTAAAGAGTCCGCACCATACTTAAACACTGTTTGTGTCTATGGTGGTGTTTCTTATGTTACACAACAAAGTGCTCTTTCCCGTGGGGTTGATGTGGTGGTTGGAACTCCGGGTAGAATAATTGATCTCATAAATGGGAATAGCCTCAAACTGAATGAAGTTGAATATCTGGTTCTCGATGAAGCCGATCAGATGCTTGCAGTTGGTTTTGAGGAGGATGTTGAAGTAATTTTAGAGAAGCTTCCATCTGAGCGACAAAGCATGCTCTTTTCAGCAACAATGCCCGGTTGGGTAAAGAAACTGGCACGGAAGTACTTGGACAATCCATTGACGATTGATTTGGTTGGTGATCGAGATGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTATATCAGCTACTGCAACTTCAAAGCGGACCATCCTCAGTGATCTAATTACAGTTTATGCAAAGGGTGGAAAGACTATTGTTTTTACTCAGACAAAGAAAGATGCTGATGAAGTATCACTGGCATTGTCATCTATCATAACTTCTGAGGCATTGCATGGAGATATTTCTCAGCACCAGAGGGAGAGGACATTGAATGGTTTTCGGCAAGGGAAGTTTACTGTGCTTGTCGCAACAGATGTTGCAGCTCGAGGGCTTGATATTCCCAATGTTGATCTGGTTATCCACTATGAACTTCCAAATGATCCAGAGACATTTGTACATCGCTCTGGACGTACTGGACGTGCTGGGAAAGAAGGTACTGCTCTTCTAATGTACACCAGCAGCCAAAGAAGAACTGTGAGATCTCTTGAACGAGATGTAGGTTGCAGGTTTGAATTCATTAGTCCACCAGCTATAGAAGAGATTTTGGAATCATCTGCCCAACAAGCAGTTGCTACTCTTAATGGAGTTCACCCTGAATCTATAGAGTTTTTCACCCCAACTGCACAAAAATTGATTCAAGATCAAGGAGCAACTGCGCTTGCTGCTGCATTAGCGCATCTAAGTGGATTCTCTCGACCACCTTCATCTCGATCTCTTATAAACCATGAGCAGGGATGGGTAACTTTGCAACTGACTCGAGCTTCGACCTATTCAAGAGGTTTCTTTTCTGCTAGAGTTGTCACTGGGATGCTCTCTGATCTGCATTCTCCAGCTGCTGATGAAGTTGGAAAGATACATATAATAGCTGATGAAAGAATTCGTGGGGCAGTTTTTGATCTTCCGGAGGACATAGCAAAAGAGTTGCTGGCCAAGGAAATGCCACCGGGAAGCACTATTTCGAAGATCACTAAGTTACCTCCTTTGCAAGATGATGGACCTTCCAGTGACTACTATGGCAAGTTTTCTGGCAGAGATCGGTTTAGTCGAGGAGGCTTGAGAGGTGGTAGGAGAGGGTATAGTAACTCAAGAGGTTGGAATGGTGGTCGTGATTCCGACGATGAAATGAGTAACCCATATAGGAGGGGTGGCCGGAGTAATAGAAGCAGTAGCAACAGCTGGTCTCGTAATGCAAGAGGTGGTGGGGAGGATTGGCAGATAGGAGATAGGAGGTCAAACAGGGACAGAAGCTTTGGAGGTTCCTGTTTTGTATGTGGAAAATCTGGGCACCGGGCTGCAGAATGCCCAAACAACTAA 2340 0.4538 MASILGVSSIYQSPTLELYKRINNTSTTTTTAGPTNGAASVSLQLPDNKPHISNARRAHIVSCGISHKKGIKSRVNFIPSATATPNSWVLSEEAFKGLGQGFSGKDPLDDISEGGDYESESEPEPEPDTKFMSASTDDDQLDVAKLDLPPRLVDSLQKRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKRLSEDDNGRGFQRRSGRLPRLLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLINGNSLKLNEVEYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGDRDEKLAEGIKLYAISATATSKRTILSDLITVYAKGGKTIVFTQTKKDADEVSLALSSIITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTALLMYTSSQRRTVRSLERDVGCRFEFISPPAIEEILESSAQQAVATLNGVHPESIEFFTPTAQKLIQDQGATALAAALAHLSGFSRPPSSRSLINHEQGWVTLQLTRASTYSRGFFSARVVTGMLSDLHSPAADEVGKIHIIADERIRGAVFDLPEDIAKELLAKEMPPGSTISKITKLPPLQDDGPSSDYYGKFSGRDRFSRGGLRGGRRGYSNSRGWNGGRDSDDEMSNPYRRGGRSNRSSSNSWSRNARGGGEDWQIGDRRSNRDRSFGGSCFVCGKSGHRAAECPNN* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00143 779 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 119 676 - -
Pte15g00143 779 FunFam ATP-dependent RNA helicase RhlE 133 353 - -
Pte15g00143 779 Pfam Helicase conserved C-terminal domain 376 484 IPR001650 -
Pte15g00143 779 ProSiteProfiles Zinc finger CCHC-type profile. 763 778 IPR001878 GO:0003676|GO:0008270
Pte15g00143 779 MobiDBLite consensus disorder prediction 658 779 - -
Pte15g00143 779 MobiDBLite consensus disorder prediction 723 740 - -
Pte15g00143 779 Pfam GUCT (NUC152) domain 571 671 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pte15g00143 779 CDD SF2_C_DEAD 364 493 - -
Pte15g00143 779 SMART c2hcfinal6 762 778 IPR001878 GO:0003676|GO:0008270
Pte15g00143 779 CDD DEADc 152 351 - -
Pte15g00143 779 MobiDBLite consensus disorder prediction 100 134 - -
Pte15g00143 779 SUPERFAMILY Retrovirus zinc finger-like domains 751 778 IPR036875 GO:0003676|GO:0008270
Pte15g00143 779 FunFam Nucleolar RNA helicase II 372 562 - -
Pte15g00143 779 Pfam DEAD/DEAH box helicase 165 339 IPR011545 GO:0003676|GO:0005524
Pte15g00143 779 Gene3D - 367 562 IPR027417 -
Pte15g00143 779 SMART helicmild6 404 484 IPR001650 -
Pte15g00143 779 Pfam Zinc knuckle 762 778 IPR001878 GO:0003676|GO:0008270
Pte15g00143 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 350 IPR014001 -
Pte15g00143 779 SMART ultradead3 160 367 IPR014001 -
Pte15g00143 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 505 IPR027417 -
Pte15g00143 779 CDD GUCT_Hera 578 658 - -
Pte15g00143 779 Gene3D - 142 354 IPR027417 -
Pte15g00143 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 524 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00143 Pte-Chr15 1050243 1056788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00143 146 506 Eukaryotic Initiation Factors Gene Family AT1G72730 37.158 5.14e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00143 - - qsa:O6P43_010955 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00143 15 1050243 1056788 Pte15g00143 15 1050243 1056788 RCT