Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00140 ATGTCTGTCTCGAGACTTAGCCACTCATTTAGCAATTCTGTTCTATTTAGACAAAATACTAAGACGATTGCGCAGACGACTGTTGATGCAAAACTCCAGGCAAAATTCGAGGAGTCAGGGACTTCCTTTGACTACTCTAGCTCTGTACGAGAGACCAGGGCCACTGCTGAACGTCGACCTCCGAAGCCTGATGGAGTGACTATAGCATATCTGCATCAAATGCAAAAGGGCAAGCTAATACAACCATTTGGATGCTTGCTAGCCTTGGATGAGAAAACATTTAAGGTGATTGCTTACAGTGAAAATGCAGCTGAACTGCTTACCATGGTTAATCAGGCTGTTCCGAGTGTTGGAGACCATCCGGTCCTTGGAATCGGAAGTGATATGTGGTCCATCTTCACTTCCCCAAGTGCTGCTGCCTTGCATAAAGCGCTAGAATTTCGGGATGTTACGCTTCTTAATCCCATTTTAGTGCATAGTAAAACTTCTGGAAAGCCCTTTTATGCAATCGCTCACAGAGTTACAGGAAGCTTGATTGTTGACATAGAACCAGTGAATCCTAATGAAGTTCCTATGACTGCAGCAGGGCCCCTGCAATCTTACAAATTAGCGGCCAAGGCAATTACCAGGTTACAATCTTTGCCAAGTGGGAGCATGGAAAGGCTCTGTGATACGATGGTGCAAGAGGTTTTTGAACTCACTGGGTACGACAGGGTGATGGCATATAAATTTCATGAGGATGATCATGGGGAAGTAATTGCTGAGATTACAAAGCCAGGATTGGAGCCATATCTAGGCTTGCATTACCCGGCAACTGATCTTCCGCAGGCTTCACGTTTTTTATTCATTAAGAATAAAGTGCGCATGATAGTTGATTGCGGTGCAAAACATGTTAAAGTGCTGCAAGATGAAAAACTCCCTTTTGATCTGACCTTGTGTGGATCAACCATGAGGGCACCCCACAGCTGCCACTCACAGTACATGAAGAACATGAACTCTATAGCCTCCCTGGTTATGGCAGTTGTGGTTAATGAAGGAGAGGGAGAGAGTGAGGGTTCTGATTCTGCTGAGCCTCGAAAGAGGAAGAGACTTTGGGGGTTGGTGGTCTGCCATAACACAACTCCAAGGTTTGTGCCATTCCCTCTTAGATATGCTTGTGAGTTTCTAGCACAAGTGTTTGCCATTCATGTAAACAAGGTGTTGGAATTAGAGGATCAGATTGTTGAGAAGCGTATATTTCGCACTCGGACCCTTCTCTGTGATCTGCTAATGAGGGATGCTCCCCTTGGTATAGTATCACAAAGCCCTAATATAATGGATCTAGTAAAATGTGACGGAGCTGCCCTTTTTTACAAGAACCAGAAATGGGGACTGGGAGTGGCGCCAACTGATTCCCAGCTTCGTGAGATGGCCTTGTGGCTGTCTGAGCATCATATGGATTCCACTAGTTTTTGCACAGACAGCTTATATGATGCAGGTTTTCGTGGGGTGCAGGCTCTAGGCGACACAGTATGTGGAATGGCAGCTGTGAGGATTACTTCAAAAGATATGATTTTCTGGTTCAGGTCCCATACTGCTACTGAAATTAAATGGGGTGGTGCAAAGCAAGAACCTGGTGAGAAGGATGATGGTAAGCGGATGCATCCAAGGTCATCATTCATTGCTTTTCTTGAAGTTGCGAAGAAAAGAAGTCTCCCTTGGAAAGACTATGAAATGGATGCCATACATTCATTGCAGCTAATGCTTAGAAATTCACTAAAAGACAAGGAGATGATGGAGGCAATTAATACCAGGCTAGGTAATCTCAAAATCGAGGGGACGCAACAACTTGAAGCAGCGACAAGTGAGATGGTCCGTTTAATTGAAACAGCCACGGTGCCTGTTTTGGCAGTTGATGTTGATGGATTAGTCAATGGCTGGAATACGAAAATTGCTGAGTTGACTGGTCTTCCAGTTGAAAATGCTACTGGAAAGCATTTGCTCGCTCTTGTAGAAGATACTTCGATAGATACAGTGCAGAAGTTGATATGCTTGGCATTGCAAGGTAATTTTATTGATCCTCCTCTTTCAATCTTATTCCTAAAATGCGCTCTTGAAATCAGGAGCAGGATATCACAAGCAAAAATGTTAACTGGACATTACTGTACTAGTTCTAAGGAATGCACCGTCATCTTTTGTAATGGTTAG 2187 0.4408 MSVSRLSHSFSNSVLFRQNTKTIAQTTVDAKLQAKFEESGTSFDYSSSVRETRATAERRPPKPDGVTIAYLHQMQKGKLIQPFGCLLALDEKTFKVIAYSENAAELLTMVNQAVPSVGDHPVLGIGSDMWSIFTSPSAAALHKALEFRDVTLLNPILVHSKTSGKPFYAIAHRVTGSLIVDIEPVNPNEVPMTAAGPLQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDLPQASRFLFIKNKVRMIVDCGAKHVKVLQDEKLPFDLTLCGSTMRAPHSCHSQYMKNMNSIASLVMAVVVNEGEGESEGSDSAEPRKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKVLELEDQIVEKRIFRTRTLLCDLLMRDAPLGIVSQSPNIMDLVKCDGAALFYKNQKWGLGVAPTDSQLREMALWLSEHHMDSTSFCTDSLYDAGFRGVQALGDTVCGMAAVRITSKDMIFWFRSHTATEIKWGGAKQEPGEKDDGKRMHPRSSFIAFLEVAKKRSLPWKDYEMDAIHSLQLMLRNSLKDKEMMEAINTRLGNLKIEGTQQLEAATSEMVRLIETATVPVLAVDVDGLVNGWNTKIAELTGLPVENATGKHLLALVEDTSIDTVQKLICLALQGNFIDPPLSILFLKCALEIRSRISQAKMLTGHYCTSSKECTVIFCNG* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00140 728 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Pte15g00140 728 SUPERFAMILY GAF domain-like 409 586 - -
Pte15g00140 728 Pfam PAS fold 69 185 IPR013654 GO:0006355
Pte15g00140 728 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Pte15g00140 728 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Pte15g00140 728 SMART pas_2 615 681 IPR000014 -
Pte15g00140 728 Pfam PAS fold 616 683 IPR013767 GO:0006355
Pte15g00140 728 PANTHER OS08G0260000 PROTEIN 68 659 - -
Pte15g00140 728 SUPERFAMILY PYP-like sensor domain (PAS domain) 619 684 IPR035965 -
Pte15g00140 728 Gene3D PAS domain 601 685 - -
Pte15g00140 728 Gene3D PAS domain 78 321 - -
Pte15g00140 728 Gene3D - 406 579 IPR043150 -
Pte15g00140 728 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Pte15g00140 728 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Pte15g00140 728 Pfam Phytochrome region 415 589 IPR013515 GO:0006355|GO:0009584
Pte15g00140 728 FunFam Phytochrome 406 537 - -
Pte15g00140 728 SUPERFAMILY GAF domain-like 198 398 - -
Pte15g00140 728 CDD PAS 624 676 IPR000014 -
Pte15g00140 728 Gene3D - 199 562 IPR029016 -
Pte15g00140 728 SMART gaf_1 218 411 IPR003018 GO:0005515
Pte15g00140 728 Pfam GAF domain 218 400 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00140 Pte-Chr15 1034111 1036297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00140 1 682 Histidine Kinase Gene Family AT1G09570 74.964 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00140 K12120 - cave:132186283 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00140 15 1034111 1036297 Pte15g00140 15 1034111 1036297 RCT