Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00139 ATGGTAGGCAAAGAAGAGAAAAACTTCCAATTTGAGATGAAAACATATGGGTCTAAGGTTGATTCTGGTCCTGTCAGCCTAGTGACGAATGCTTGTGCAAGTAGAGACCTTCAACATAATATTGTTGGGGTTTGTTTTGTGGCCCAGGATATCACACAAGAGAAGGTAGTTATGGATAAATTCACTCGAATTCAAGGTGATTACAAGGCTATTGTGCAAAATCCAAACCCTTTGATCCCCCCAATCTTCGGTTCAGATGAATTTGGCTGGTGTTCTGAGTGGAATCTGGCTATGACAAAGTTATCTGGCTGGAAGCGTGAAGAGGTCATTGATAAAATGCTTTTGGGAGAGGTTTTCGGGATCCATACAGCTTGCTGTCGTCTCAAGAATCGAGAAGCTTTTGTTAATCTCGGGATTGTGCTTAACAAAGTCATGGTTGATGAGGAGAATGAAAAGGTTCCTTTTGGTTTCTTTGCTAGGAGTGGGACCTATGTCGACTGCCTTCTTTGTGTTACTAAGAAAGTGAACGAAGAAGGCGTGGTGACTGGAGTCTTTTGCTTTCTGCAGTTATCTAGTCTAGAGCTGCAACAAGCACTCCGTGCTCAACGCCTATCCATGCAAACAGCATTGAAGAGATTAAAAACTCTAATTTACACAAAAAAACAGATCAAGAATTCTCTGAATGGAATTATATTTGCTCGAAAGATGTTGGAGGCTACTGAACTAGGATCTGAACAGAAGAGACTGCTTCACATCAGTGATCGATGCCTTCAGCAGCTAAGCAAGGTGCTTGATGACTCTGATTTTGACAACTTAATTGATGGATGCTTGGACTTAGCAACGGTTGAATTCAGTATACAAGAGATTTTGACTTCTGTACTCAGTCAAATTACGATGAAGAGCAATGCGAGGGGAATCCAGATAGTCAATGATGTAGCAGACGTAGTCCAGAATGAAACATTATACGGAGATAGTCTCAGGCTTCAGCAGGTCTTAGTTGATTTCTTCTTGGTGTCAATAGATAATACACCATCTGGAGGTCAGGTTGTCATCACAGGCCATCTAAACAAAGATCACCCGGGACAGATGGTTCATCTTGCAAATTTGGAGCTCAGCATCACACACACTGGAACTGGGGTGTCTGAAGAAATGCTGATTAAGATGTATGGAAGTGATGTCGATGAAACTGATGAAGGGATCAGCTTGTTCATGGGCCGAAAGCTCTTGAAGCTCATGAATGGAGATGTGCACTATCTGCGAGAAGCTGGAAAATGCTCTTTCGTAATATCTGCTGAACTTGCTATGTCACTGTCAAGTTAG 1320 0.4212 MVGKEEKNFQFEMKTYGSKVDSGPVSLVTNACASRDLQHNIVGVCFVAQDITQEKVVMDKFTRIQGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNLAMTKLSGWKREEVIDKMLLGEVFGIHTACCRLKNREAFVNLGIVLNKVMVDEENEKVPFGFFARSGTYVDCLLCVTKKVNEEGVVTGVFCFLQLSSLELQQALRAQRLSMQTALKRLKTLIYTKKQIKNSLNGIIFARKMLEATELGSEQKRLLHISDRCLQQLSKVLDDSDFDNLIDGCLDLATVEFSIQEILTSVLSQITMKSNARGIQIVNDVADVVQNETLYGDSLRLQQVLVDFFLVSIDNTPSGGQVVITGHLNKDHPGQMVHLANLELSITHTGTGVSEEMLIKMYGSDVDETDEGISLFMGRKLLKLMNGDVHYLREAGKCSFVISAELAMSLSS* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00139 439 SUPERFAMILY PYP-like sensor domain (PAS domain) 81 187 IPR035965 -
Pte15g00139 439 Gene3D - 274 433 IPR036890 -
Pte15g00139 439 Pfam PAS fold 67 189 IPR013767 GO:0006355
Pte15g00139 439 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 432 IPR003594 -
Pte15g00139 439 CDD HisKA 222 266 IPR003661 GO:0000155|GO:0007165
Pte15g00139 439 CDD PAS 78 189 IPR000014 -
Pte15g00139 439 PANTHER TWO-COMPONENT HISTIDINE KINASE 223 419 - -
Pte15g00139 439 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 274 426 IPR036890 -
Pte15g00139 439 ProSiteProfiles PAS repeat profile. 67 119 IPR000014 -
Pte15g00139 439 ProSiteProfiles Histidine kinase domain profile. 218 437 IPR005467 -
Pte15g00139 439 SMART HKATPase_4 323 435 IPR003594 -
Pte15g00139 439 PRINTS Phytochrome signature 29 46 IPR001294 GO:0006355|GO:0009584
Pte15g00139 439 PRINTS Phytochrome signature 49 69 IPR001294 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00139 Pte-Chr15 1032023 1033903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00139 3 436 Histidine Kinase Gene Family AT1G09570 63.594 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00139 K12120 - tcc:18600656 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00139 15 1032023 1033903 Pte15g00139 15 1032023 1033903 RCT