Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00107 ATGGTAGGGGGAGAAGTTAGCTTTCGAAGCAAGTCCAAGAGAAGGGTTCTATCAGAGCGTGGGGACTCTGATGACTCAGATGAGGATTTTATGATTTCAGGCGAAGAAGAGGAGCTTTTCAAAATCTCGGGAGATTATTGCTCTATTTTAGATGGAGATTATTCGGAGGGAAATTTTCATAATTTTTCTGAGGAGGGATTCAAAGAACTTAGTGAGCCCTGTAGTTCAAAAAGGAAGAAGGGCGCTCATCATCAATCAGAAGTTGGGTGTGAAGCATCCAGGAGGCGGGGAAGGATTGCTTTTAGAGGGAAAATAGAAGGAGAAGATGATGGGTATGATGACAATAATGGCGACGATGAAGATTATGATTATGTGGAGGATGAGGAGGAGGATGAAGATGAGGAATTCAAACCAGATGATGACGATAGTTTAGATGATGAAGAAGAAACGGGGGTGAAACAGAAGGAAAGTAAAGTGAAAACACGAAACCAGAGTTTACAGAAAAGGAGTTCAGCCGGAGGTACAAAACGGAAGAATTCTAGGGTGGCACAGAAGTCATTGGGTAAGAAAAGAAGAATGAATGGCAGGTCAAGAAAGAAAACTTTCCTTCCATCTTCAGACTCAGATTTTACATATTCTGAATCAACTGATTATGAGTATACCATCTCCGAGGAGGAGAGAGAGCAAGTGAGGGAAGCAAAAGAGTTGTGTGGGAATTGGAGAATCTATCCAAGGAATTCGTCTTTTCCTACTAAATCTGAGAAGAATGCGCATTTGCGTAAGCAAAGAAAGCCTCCATCAAGAAAGGTTAAGGGGAAGGTGACTAAACCTTTGAGTCAAAAAGGTAAGGAGAAGATAGATGAATTGAAGACTGAAGTGGCAAAGCAGGTCTGTGGGATTTGTTTGTCTGACGAAAATACTCGAAAAGTTAGGGGGAAGCTCAATTGCTGTACTCATTATTTTTGCTTTTCCTGCATCATGAAGTGGGCAAAAGTGGAATCTCGTTGCCCCATATGCAAGCAGAGATTTCAAACAATTACTAAACCTGCCAGGTGCGTTGCACGAGTTGATTTGAGAGAAGTGGTGATACAAGTTCCTGAACGTGATCAGGTCTATCAGCCCTCTGAAGAAGAGTTCTGGAATTCTATGGATCCATATGACGGCGTGATTTGTTCTGAATGTAATGAAGGTGGGGATGATGAACTGATGCTACTGTGTGATGCTTGTGATTTACCTGCACATGCATTTTGTATCGGTCTAGGACGGCAAGTGCCTGAAGGCAGTTGGTACTGTTACGACTGCAGACCCTTTGTCATGTCATCTTCAAGTTCGCAAGCTCAAGGACGTGTACCTGAGCAAAGAAGGATCAGTCAGGCAATGCATACTCAAGAATCAGCAGGAGTAATTGCTATGGAAGGAATTGACCTCAACTTGATGACTCCTCCGCTTTTTTCTGTGACCCAAATAATCAGTGGTCTTTCATCTCCTAGAGTGCAAACTAGAACCATACTAGTCCCAGCTATAGTATCTGGAGGTGGGAACTCGACCTTATCGGGCAGGCACTGGATGCATCCGCAAAATCAGAATAGTATCAGTCATAATCTGTATATCTCTCAAATTAATGGAATTTCAGTCATAATCCAGCATTCGAGGATGCATTCTACGGGTACATCACATCGTGCTAGCAACTCTGCATTACAAGGTACTGTAGTTGCAAATGGGCGCGTGTATGGCACAATATGGCCTGGGATTCAGACTCCCGAGCACAGATAA 1773 0.4303 MVGGEVSFRSKSKRRVLSERGDSDDSDEDFMISGEEEELFKISGDYCSILDGDYSEGNFHNFSEEGFKELSEPCSSKRKKGAHHQSEVGCEASRRRGRIAFRGKIEGEDDGYDDNNGDDEDYDYVEDEEEDEDEEFKPDDDDSLDDEEETGVKQKESKVKTRNQSLQKRSSAGGTKRKNSRVAQKSLGKKRRMNGRSRKKTFLPSSDSDFTYSESTDYEYTISEEEREQVREAKELCGNWRIYPRNSSFPTKSEKNAHLRKQRKPPSRKVKGKVTKPLSQKGKEKIDELKTEVAKQVCGICLSDENTRKVRGKLNCCTHYFCFSCIMKWAKVESRCPICKQRFQTITKPARCVARVDLREVVIQVPERDQVYQPSEEEFWNSMDPYDGVICSECNEGGDDELMLLCDACDLPAHAFCIGLGRQVPEGSWYCYDCRPFVMSSSSSQAQGRVPEQRRISQAMHTQESAGVIAMEGIDLNLMTPPLFSVTQIISGLSSPRVQTRTILVPAIVSGGGNSTLSGRHWMHPQNQNSISHNLYISQINGISVIIQHSRMHSTGTSHRASNSALQGTVVANGRVYGTIWPGIQTPEHR* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00107 590 ProSiteProfiles Zinc finger RING-type profile. 298 340 IPR001841 -
Pte15g00107 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 350 IPR013083 -
Pte15g00107 590 Pfam Ring finger domain 297 340 IPR001841 -
Pte15g00107 590 MobiDBLite consensus disorder prediction 182 198 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 148 163 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 70 214 - -
Pte15g00107 590 CDD RING-HC_Topors 296 343 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 247 282 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 257 276 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 199 214 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 70 110 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 1 31 - -
Pte15g00107 590 SUPERFAMILY FYVE/PHD zinc finger 363 436 IPR011011 -
Pte15g00107 590 MobiDBLite consensus disorder prediction 111 147 - -
Pte15g00107 590 ProSitePatterns Zinc finger RING-type signature. 317 326 IPR017907 -
Pte15g00107 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 437 IPR013083 -
Pte15g00107 590 ProSiteProfiles Zinc finger PHD-type profile. 388 437 IPR019787 -
Pte15g00107 590 PANTHER F18C1.6 PROTEIN 1 558 - -
Pte15g00107 590 SMART ring_2 298 339 IPR001841 -
Pte15g00107 590 MobiDBLite consensus disorder prediction 164 181 - -
Pte15g00107 590 SUPERFAMILY RING/U-box 297 346 - -
Pte15g00107 590 MobiDBLite consensus disorder prediction 8 22 - -
Pte15g00107 590 SMART PHD_3 390 435 IPR001965 -
Pte15g00107 590 Pfam PHD-finger 390 435 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00107 Pte-Chr15 826692 829309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00107 385 434 C2H2 Transcription Factor Family AT3G01460 39.216 2.94e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte15g00107 PHD 2.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00107 - - qsa:O6P43_007449 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00107 15 826692 829309 Pte15g00107 15 826692 829309 RCT