Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00080 ATGTCAAACGTCACGGGTGGTACTGACGGTGGGAGCTTCTCTTCTGAAAACATAAGTGAAGTTGCTTTTCATAAACGCCCACGTGCTGAGCTACTTAACCACTTCCATAGCTCAAATTCTTCCACTACAACCAATAGCAATGGCTCACACTCTTCGCAACAGCAACCTCATCCACCTGCTAAGAAGAAAAGAAGCCTTCCGGGGACTCCAGATCCCAGTGCTGAAGTGGTTGCTCTATCACCAAACACCCTTATGGCTACAAACAGATTCGTGTGTGAGATTTGTCATAAAGGGTTTCAGAGGGACCAAAACCTTCAGCTACACAGGCGAGGCCATAATTTGCCTTGGAAGCTTAAGCAACGAACAAGCACTGAGATTAGGAAGCGTGTTTATGTTTGTCCAGAACCCTCATGCGTCCACCACAATCCAGCGCGTGCATTAGGTGACCTCACTGGTATTAAGAAACACTTCAGTAGGAAACATGGCGAGAAGAAATGGAAATGTGACAAATGCTCCAAAAAATATGCAGTCCAGTCTGACTGGAAAGCCCATTTGAAAACATGTGGTACCAGGGAATATAAGTGTGATTGTGGCACCATTTTTTCCAGAAGAGACAGCTTTATAACCCATAGAGCATTCTGTGATGCACTGGCTGAGGAGAACAAAACACACCAAATGAGTCAATTGGGGTCAACTTTGCAAGGCCAACAAGCTGTCTCCAATCTCCTTTCCTCGTTACCTATCAGCTCAAACCACAACACGCTAATGCGGGCAACCGAATTCAACCAATCCGACCCAAAAAGTACTCCACTGTCACTCCCACAACACGATCATCTCATGGGCGGAACCATATTGGGGGGAAGCTTCTCATCGAGTTCCTCTCCATCTCTTCAACTGAGTACGAACTCCATGAACATCCTCGAAGGACATGGACAGCAATTGGCTGCCGGCATGGCTCACATGTCAGCCACAGCTTTGCTTCAGAAAGCTGCTCAAATGGGATCAAGTATGAGCAACAATGGTACCAGCATGGCACCGTCAACATTTGGTTCGTTGCAGCACCCCAATGGTAAGCAGATGTTTGTGAATCCCTTCGTGTCGAACGGTGAGCAGGATCATATCCATGGCAATGCCTCCGAATCTTTCAATAATAACTGGATGGTTGGTAACGCGGAAATGAGCAATATGGCAATGTACAATGCTTTGGTCGATCAGATCCACCCTTTGTCGAAGAACGTAGAGGATAATAGTCGAAAGAGCAGCAGTGGGTTGCAAGGCGGCAGTCAAAGTGTTGGCCTCGGCCATGGGACTAGTAATGGGAGTGATACAATGACTTTGGATTTCTTGGGTGTTGGAGGAGGCTCCAGACATGGGAACTTCTACAGCCAACAACAACAGAAAAGACAGATGATGGGTTTTGAAGGATTAAGTCAAAATGGATTGCAGGGTTTGAATCAGTTACAACAACAAGCAGCATATGAAAAAGGCATTTGGCAAGTTAGAGAATAA 1509 0.4619 MSNVTGGTDGGSFSSENISEVAFHKRPRAELLNHFHSSNSSTTTNSNGSHSSQQQPHPPAKKKRSLPGTPDPSAEVVALSPNTLMATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHLKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENKTHQMSQLGSTLQGQQAVSNLLSSLPISSNHNTLMRATEFNQSDPKSTPLSLPQHDHLMGGTILGGSFSSSSSPSLQLSTNSMNILEGHGQQLAAGMAHMSATALLQKAAQMGSSMSNNGTSMAPSTFGSLQHPNGKQMFVNPFVSNGEQDHIHGNASESFNNNWMVGNAEMSNMAMYNALVDQIHPLSKNVEDNSRKSSSGLQGGSQSVGLGHGTSNGSDTMTLDFLGVGGGSRHGNFYSQQQQKRQMMGFEGLSQNGLQGLNQLQQQAAYEKGIWQVRE* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00080 502 SUPERFAMILY beta-beta-alpha zinc fingers 89 186 IPR036236 -
Pte15g00080 502 MobiDBLite consensus disorder prediction 33 59 - -
Pte15g00080 502 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Pte15g00080 502 Gene3D Classic Zinc Finger 68 135 - -
Pte15g00080 502 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 40 465 IPR031140 -
Pte15g00080 502 MobiDBLite consensus disorder prediction 1 73 - -
Pte15g00080 502 MobiDBLite consensus disorder prediction 1 19 - -
Pte15g00080 502 SMART c2h2final6 90 112 IPR013087 -
Pte15g00080 502 SMART c2h2final6 166 186 IPR013087 -
Pte15g00080 502 SMART c2h2final6 131 161 IPR013087 -
Pte15g00080 502 MobiDBLite consensus disorder prediction 413 439 - -
Pte15g00080 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Pte15g00080 502 Pfam Zinc finger, C2H2 type 90 112 IPR013087 -
Pte15g00080 502 MobiDBLite consensus disorder prediction 415 439 - -
Pte15g00080 502 FunFam protein indeterminate-domain 12-like 69 137 - -
Pte15g00080 502 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Pte15g00080 502 Gene3D Classic Zinc Finger 144 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00080 Pte-Chr15 574651 577852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00080 56 459 IDZ Gene Family AT3G50700 46.292 2.05e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte15g00080 zf-C2H2 0.011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00080 - - qsu:111995671 526.554