Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00062 ATGAGCTTCAACTCTGAGGAACCCATTCGAGATGGAACATATGAAAGCAGTCATGGAATCAGTTCTGTACATCTACGTGTGCTCTTCTTAATTATTTTGTTGGCGATCCCTGTTACAGAGGCCCAACAGGGATCTAACACTCAACAAGATCCATACCCGTATTCGAAATTCAATCCCCAGATGGCTATCATCATAGTCATTCTGATTGCTGCGCTTTTCTTAATGGGATTTTTCTCCGTTTACATCCGCCACTGCTCGGATACAGCCACCGGGAATAGTGTCAGAGCATTGGGTGGTACTGTGCTCGGTCGATCTAGAAGGGCGGCGCGTGGACTTGATGCATCTGTCTTAAACACATTTCCGGTTCTGGAGTACTCGGAGGTCAAAGAGCACAAGATCGGAAAAGGAACTCTTGAATGCGCTGTCTGTCTCAGTGAGTTCGAGGACGATGAAACTCTGCGTTTGATTCCTAAATGTGACCATGTCTTCCATCCCGAGTGCATCGATGAATGGTTGGCTTCACACACCACTTGCCCGGTCTGTCGAGCGAACTTGGTTCCTCAGCCCGATGAGTCCGCACATGGGGTCCCGGAGTTGCAAACAGATCCGGACGTTGAAGCTCAGCATCCCTCTGAACCGTTGCCAGAAGATCCTAATGACGAGGCTGAGGATAGACGGATTATTCAAGTAACCGAACCGGAAGGTAATTGGTTGAATACGACTCTAAGCGGAAACCGCACTCGTGGGTCTCGGTCCAACCGGCACCGTAAATTTTCCCGATCGCATACGACCGGGCATTCTGTCGTTCAACCCGCTGAAAACACGGAACGGTTTACTTTGAGATTGCCGGTCGAAGTGAGAAACCAGTTATTAAACCGGGAATTGCACAGAGCATCAAGCATGGTTGTATTGCCTCGTGGAGGAAGTTCGAGAAGAGGGTATCGAACTGGTGGTGAAGGAAGCAGCAGAGGGAAATACTCCAGGCGGTTGGATAAGTTGGACCGAGTCTTTAAGTCGGACCGGTGGGTCTTTTCTAAGTCGCCCCCCTTTTTCATGAGAGGTTCATCGATGAAGTCCCCTAAGGTGGCTACTAGTGGCAACGAAGATAACATGGCTCAGCCTATTGCACAGCCACATACTGATTCTGCTCGTCCTCCGGTCTAA 1164 0.4957 MSFNSEEPIRDGTYESSHGISSVHLRVLFLIILLAIPVTEAQQGSNTQQDPYPYSKFNPQMAIIIVILIAALFLMGFFSVYIRHCSDTATGNSVRALGGTVLGRSRRAARGLDASVLNTFPVLEYSEVKEHKIGKGTLECAVCLSEFEDDETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPDESAHGVPELQTDPDVEAQHPSEPLPEDPNDEAEDRRIIQVTEPEGNWLNTTLSGNRTRGSRSNRHRKFSRSHTTGHSVVQPAENTERFTLRLPVEVRNQLLNRELHRASSMVVLPRGGSSRRGYRTGGEGSSRGKYSRRLDKLDRVFKSDRWVFSKSPPFFMRGSSMKSPKVATSGNEDNMAQPIAQPHTDSARPPV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00062 387 SUPERFAMILY RING/U-box 139 190 - -
Pte15g00062 387 MobiDBLite consensus disorder prediction 189 222 - -
Pte15g00062 387 PANTHER RING FINGER DOMAIN-CONTAINING 42 192 - -
Pte15g00062 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Pte15g00062 387 CDD RING-H2_EL5-like 139 182 - -
Pte15g00062 387 SMART ring_2 140 181 IPR001841 -
Pte15g00062 387 MobiDBLite consensus disorder prediction 358 377 - -
Pte15g00062 387 MobiDBLite consensus disorder prediction 349 387 - -
Pte15g00062 387 MobiDBLite consensus disorder prediction 237 267 - -
Pte15g00062 387 MobiDBLite consensus disorder prediction 306 327 - -
Pte15g00062 387 FunFam E3 ubiquitin-protein ligase ATL6 101 188 - -
Pte15g00062 387 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Pte15g00062 387 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00062 Pte-Chr15 456703 460538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00062 25 374 Rapid Response to Elicitors AT3G05200 46.045 4.08e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00062 K10664 - qsa:O6P43_007546 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00062 15 456703 460538 Pte15g00062 15 456703 460538 RCT