Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00037 ATGGTAAGATCCATGCTTTCAGCTATGGGTTCGACAGAAAATGTGTCCAATATCGAGGAAGATTTATATTACCCTGAGGATTCTTCAAGGGAGAGAAGAATCTCGATCACTCCATTCAAATTCTTCAAGGTAGAGTGTTGCGTGTGTCTTTGTGGGTTTGAAGCGGATGAGGAGGTGAGTGAATTATCATGCAAGCATTTCTTCCACAAAGGTTGTTTAGACAAGTGGTTCCATAACAAGCACATCACATGCCCTCTCTGCCGCTCGATTGAGTAG 276 0.4312 MVRSMLSAMGSTENVSNIEEDLYYPEDSSRERRISITPFKFFKVECCVCLCGFEADEEVSELSCKHFFHKGCLDKWFHNKHITCPLCRSIE* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00037 91 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 91 IPR013083 -
Pte15g00037 91 SMART ring_2 46 87 IPR001841 -
Pte15g00037 91 PANTHER - 1 89 IPR044249 -
Pte15g00037 91 ProSiteProfiles Zinc finger RING-type profile. 46 88 IPR001841 -
Pte15g00037 91 Pfam Ring finger domain 45 88 IPR001841 -
Pte15g00037 91 SUPERFAMILY RING/U-box 45 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00037 Pte-Chr15 330714 331384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00037 45 89 C3H Transcription Factor Family AT2G04240 55.556 1.13e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00037 K16285 - csav:115712493 125.561