Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g00027 ATGGCTGGCAATTCTTCAGAGGATCTTGGTGATGATTTCTTTGAGCAGATCTTAGCTGTGCCCTCTTCTTACTCAAACTCGGAGGTAACAGGGTATGGCAGGGCAGGGGCTGCTGATGTAGGCGTCATGCCAATGGTGTTGCAGTTGGGTTCTAGTATTCACACTGATGATGGTTCTGGTAGTAGTGGAAGTGGGCTGAGAGGGGTTGGATCTATTGGGATGGGCATGCCTCTTAGATTAAATTTGGAGCAGGGGTTCTCGAGACACGACCAAGATGGTGGTGGAAGTTTCAAGTACAATGATGGAGTTGCAGAAGGCAACAACAGACACCACCAGAATCATCATCATCATCATATGATAATGAACCATAACAATAGCACGACTACCTCTTCCCCTTCAAATTCAGCCATGACAGGAATCAGAGAGAGGGAGTCGGTGCGTATGACAAGTTTGTTTCCAGCGTTCGGTCAGTTGCAGTGCCAGTCAGTCCGGCCAACAGTGCCGCCGCCAACATCACAAGCCCAACTCAAGCAGTCCTTTCAACATCAACCCCTGACTCCTGGCTCTGCTGCTGCTACGCCTGCACTGGTACCGCCTGCCATTCGCCCAAGGATTCGAGCACGACGAGGACAAGCTACAGATCCCCACAGTATTGCTGAGCGATTACGAAGGGAGAGGATTGCAGAAAGAATGAAGGCATTGCAGGAATTGGTTCCAAGTGCAAATAAGACTGATAGAGCAGCTATGCTTGATGAAATTGTGGACTACGTGAAGTTCCTCAGACTTCAAGTTAAGGTTTTGAGCATGAGCAGGTTGGGTGGAGCAGGTGCTGTAGCTCAGCTTGTGGCTGATGTTCCCTTATCAACAAGGGAGGGCGATGGAGCTGAAAGTGGGACTGATCGACAGGCATGGGCAAAATGGTCAAATTACGAAACTGAACAACAAGTAGCGAAACTAATGGAAGAAGATGTTGGAACTGCTATGCAGTTCCTTCAGTCCAAAGCACTATGCATTATGCCGATATCTCTAGCCTCTGCAATTTTTCGCACTTCTCAATCAGATGCACCCGCTCTTGTCAAAAGCGAATCAAATAACTTCCCATAG 1104 0.4837 MAGNSSEDLGDDFFEQILAVPSSYSNSEVTGYGRAGAADVGVMPMVLQLGSSIHTDDGSGSSGSGLRGVGSIGMGMPLRLNLEQGFSRHDQDGGGSFKYNDGVAEGNNRHHQNHHHHHMIMNHNNSTTTSSPSNSAMTGIRERESVRMTSLFPAFGQLQCQSVRPTVPPPTSQAQLKQSFQHQPLTPGSAAATPALVPPAIRPRIRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSTREGDGAESGTDRQAWAKWSNYETEQQVAKLMEEDVGTAMQFLQSKALCIMPISLASAIFRTSQSDAPALVKSESNNFP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g00027 367 SMART finulus 217 266 IPR011598 GO:0046983
Pte15g00027 367 FunFam Transcription factor bHLH66 208 273 - -
Pte15g00027 367 Pfam Helix-loop-helix DNA-binding domain 216 260 IPR011598 GO:0046983
Pte15g00027 367 Gene3D - 206 268 IPR036638 GO:0046983
Pte15g00027 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 270 IPR036638 GO:0046983
Pte15g00027 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
Pte15g00027 367 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g00027 Pte-Chr15 265558 270518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g00027 176 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 68.394 2.09e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte15g00027 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g00027 - - qsa:O6P43_007633 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g00027 15 265558 270518 Pte15g00027 15 265558 270518 RCT