Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g01261 ATGTCTTTCACTGGGACTCAGCAGAAATGCAAGGCTTGTGACAAAACTGTTCATTTCGTTGACTCCGTATCTGCAGATGGTATAGTTTTTCACAAGACCTGCTTCAAATGCTGTCTATGCAATGGCCTTCTCGTGATGAGCAACTACTGCTCCATGGATGGACTCTTGTACTGCAAGACACACTACGAGCAACTGTTCAAGGAGACAGGCAGTTATGCTAAGCCAACAGGTAGATTTAATTTAATTGAAAGCTCAATTAATAGGTCGCCTGGCAAATTCGCCTCCTTCTTCTCGGGAACACAGGACAAATGTTCAGTCTGCAAGAAAACTGTATACCCACTTGAAAAGGTGACTGTGGAAGGAGAGATGTACCACAAACCGTGTTTCAGGTGTGCTCATGGAGGATGCCAACTCACCACCTCAGATTTTGCTGCACTGAATGGAGTTCTGTACTGCAAGCCACATTTTGGACAGTTATTCAAGGAGAAAGGAAGTTATAATATTTCCGTTAAGAGTCATTCAAAGAAAATTGAAACAGAAGAGGGATCATCAGATGAAAATGCCGACACTGAAACCTAG 579 0.4301 MSFTGTQQKCKACDKTVHFVDSVSADGIVFHKTCFKCCLCNGLLVMSNYCSMDGLLYCKTHYEQLFKETGSYAKPTGRFNLIESSINRSPGKFASFFSGTQDKCSVCKKTVYPLEKVTVEGEMYHKPCFRCAHGGCQLTTSDFAALNGVLYCKPHFGQLFKEKGSYNISVKSHSKKIETEEGSSDENADTET* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g01261 192 SMART lim_4 103 155 IPR001781 -
Pte14g01261 192 SMART lim_4 9 61 IPR001781 -
Pte14g01261 192 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Pte14g01261 192 Gene3D Cysteine Rich Protein 98 168 - -
Pte14g01261 192 Gene3D Cysteine Rich Protein 4 74 - -
Pte14g01261 192 FunFam LIM domain and actin-binding 1 98 168 - -
Pte14g01261 192 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Pte14g01261 192 MobiDBLite consensus disorder prediction 173 192 - -
Pte14g01261 192 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Pte14g01261 192 PANTHER OS06G0237300 PROTEIN 99 185 - -
Pte14g01261 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Pte14g01261 192 Pfam LIM domain 104 159 IPR001781 -
Pte14g01261 192 Pfam LIM domain 10 65 IPR001781 -
Pte14g01261 192 FunFam LIM domain and actin-binding 1 4 74 - -
Pte14g01261 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Pte14g01261 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Pte14g01261 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g01261 Pte-Chr14 33811380 33812620 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pte14g01261 LIM 1.1e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g01261 - K24413 vun:114179495 270.396