LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte14g01248	ATGGCACCATTACCGGTTGAACAAACCGGTGAATCCGTACTTACAGAGCCGCAAAGAACTCTTCCGACGCCGTTTCTAACGAAGACGTTTCAACTAGTGGATGACCCTGCTGTGGATGATCTTATCTCTTGGAACGAAGACGGTACCAGCTTCATCGTCTGCCGACCAGCTGAATTCGCTAGAGATTTACTTCCTAAGTATTTCAAGCACAACAACTTTTCCAGTTTCGTTCGTCAATTAAACACATACGGATTTCGGAAAGTGGTACCGGATCGTTGGGAATTTGCGAATGAATCTTTCCGGCGAGGTGAGAGAGGGCTTTTACGAGATATCCAACGCCGGAAAGTGTCAACGACTCCAACAGCTGTTGCTGTGTCAAATATTGCTGCGAATACAGTGACGGTGGCTGCAGCAGCACATGCTGTCCCTCGAGTTTTATCTCCTACGAATTCCGGCGAGGAACAGGTGATCTCTTCGAACTCATCTCCGGCAGTGGATGCAACTAGTTTCGTACAACAGCGCACCGCAAGTTGCATCCGTGCTCCACAGTCGATCTTGGAAGAGAACGAGAGACTTAGGAAAGAGAACATGCAATTGACTAACGAGTTAACTCAATTGAAGGGTCTTTGTAATAATATACTTTCTCTGATGACTGACTTTGCTTCTAGTCATTTCGATTCTTCCAGTGGTGGAGCACCAGACGGAGAGGAGAACGCGTTGGAGCTTCTGCCGGCGAAGCCAGCACCGACGGAGGAGGAAGATGTGGCTGTAGTTGTAAATGCTAGTAATAAGGGTGGCACACATACTGAAACAAAAGTGGAGGAGGGTCCAGGAGCTGCTAAGTTGTTTGGAGTATCAATCGGTATCAAACGATGTAGAAGCGAAGAAGAGATTGTAGATGGTGCGGAACATAAACAACAGCATTCCCAAACGACGTCGCAGGGTAGTGACATTGCACCAAATAGTAATAACGAGTCATAG	981	0.472	MAPLPVEQTGESVLTEPQRTLPTPFLTKTFQLVDDPAVDDLISWNEDGTSFIVCRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANESFRRGERGLLRDIQRRKVSTTPTAVAVSNIAANTVTVAAAAHAVPRVLSPTNSGEEQVISSNSSPAVDATSFVQQRTASCIRAPQSILEENERLRKENMQLTNELTQLKGLCNNILSLMTDFASSHFDSSSGGAPDGEENALELLPAKPAPTEEEDVAVVVNASNKGGTHTETKVEEGPGAAKLFGVSIGIKRCRSEEEIVDGAEHKQQHSQTTSQGSDIAPNSNNES*	327

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte14g01248	326	PRINTS	Heat shock factor (HSF) domain signature	25	48	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte14g01248	326	PRINTS	Heat shock factor (HSF) domain signature	63	75	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte14g01248	326	PRINTS	Heat shock factor (HSF) domain signature	76	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte14g01248	326	FunFam	Heat stress transcription factor B-4	17	115	-	-
	Pte14g01248	326	ProSitePatterns	HSF-type DNA-binding domain signature.	64	88	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte14g01248	326	SUPERFAMILY	"Winged helix" DNA-binding domain	22	114	IPR036390	-
	Pte14g01248	326	MobiDBLite	consensus disorder prediction	305	326	-	-
	Pte14g01248	326	MobiDBLite	consensus disorder prediction	296	326	-	-
	Pte14g01248	326	Gene3D	-	18	115	IPR036388	-
	Pte14g01248	326	Pfam	HSF-type DNA-binding	25	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte14g01248	326	Coils	Coil	189	209	-	-
	Pte14g01248	326	SMART	hsfneu3	21	114	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Pte14g01248	326	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	21	229	IPR027725	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte14g01248	Pte-Chr14	33756954	33759090	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte14g01248	18	293	HSF	AT4G11660	54.266	1.23e-84	258

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Pte14g01248		HSF_DNA-bind	1.4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte14g01248	K09419		-	qsa:O6P43_034210	357.066