Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g01090 ATGGGGGCTCCTAAGCTGAAGTGGACTTCAGAAGAAGAAGCTGCCCTTAAAGCTGGAGTTGTGAAACATGGGGCTGGAAAGTGGCGTACGATATTGACAGATCCAGAATTCAGTTCTATTTTGCGCCAACGGTCTAATGTAGATCTAAAGGATAAATGGAGAAATATAAATGTCACTGCAATATGGGGGTCAAGGCAAAGGGCCAAGCTTGCTCTTAAAAGTAACTTGCCAGCTCCCAAGCATGATAACAAGTCGTTGGCCTTGGTGGCTGTAACCCAGAATAATGACCAAGTTCAGGACGGTAAGCTTGCTGCAGTTTCTGATGGACTGGAGCCCACTACCAATTCCAAAGAACCAGCCTCTAGATTGGATTATCTTATAGTTGAGGCTATCTCCAGTATGAAGGATACAAAAGGTTCTGACAGGGCTGCTATTGCTGCTTACATTGAGGAACATTACTTGGCACCACCAAATCTTAAAAAGATGTTGTCATCAAAATTAAAGCACATGAATGCAACTGGCAAATTGATTAAGGTAAAACATAAGTATAGGGTTTCACCAAGTTCATTCTCTGAGAAAAGAAAAGGTTCATCGTTGGTAGTTGCAGATAGAAGGCCGAAGGATTCTCCAAAAGTACAGAAGACTGAGGTTGCCATGGTTACAAAAGCCCAGATTGATGCTGAGATAACTAAGATAAAGGGCATGACTGCTCAAGAGGCGGCAGCTGCTGCTGCTCAGGCAGTTGCAGTGGCAGAAGCTGCCATTGCAGAGGCTGAGGCAGCAGCCAGAGAGGCAGAGGCTGCAGAAGCTGAAGCAGAAGCAGCACAAGTATTTGCCAAAGCAGCTATGAAGGCGCTGAAAAGCAGAATGCTACATGTTTGGTAA 885 0.4497 MGAPKLKWTSEEEAALKAGVVKHGAGKWRTILTDPEFSSILRQRSNVDLKDKWRNINVTAIWGSRQRAKLALKSNLPAPKHDNKSLALVAVTQNNDQVQDGKLAAVSDGLEPTTNSKEPASRLDYLIVEAISSMKDTKGSDRAAIAAYIEEHYLAPPNLKKMLSSKLKHMNATGKLIKVKHKYRVSPSSFSEKRKGSSLVVADRRPKDSPKVQKTEVAMVTKAQIDAEITKIKGMTAQEAAAAAAQAVAVAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKSRMLHVW* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g01090 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pte14g01090 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Pte14g01090 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pte14g01090 294 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Pte14g01090 294 Gene3D - 116 199 IPR036388 -
Pte14g01090 294 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte14g01090 294 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte14g01090 294 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Pte14g01090 294 SUPERFAMILY "Winged helix" DNA-binding domain 118 195 IPR036390 -
Pte14g01090 294 CDD SANT_TRF 7 57 - -
Pte14g01090 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte14g01090 294 Coils Coil 241 278 - -
Pte14g01090 294 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Pte14g01090 294 MobiDBLite consensus disorder prediction 188 212 - -
Pte14g01090 294 Gene3D - 8 87 - -
Pte14g01090 294 SMART sant 4 59 IPR001005 -
Pte14g01090 294 MobiDBLite consensus disorder prediction 197 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g01090 Pte-Chr14 32527195 32530190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g01090 1 295 Single Myb Histone (SMH) Gene Family AT5G67580 54.817 2.22e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte14g01090 Linker_histone 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g01090 K09422 - csav:115714046 328.176