Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g01047 ATGCCAGTTCCACTTGCACCATACCCAACACCACCTGCACCATATACATCACCTACAAACGCTGCACAGAGCCAGCTTGTCTGTTCCGGATGTCGAAACCTTCTAATGTATCCGGTTGGAGCGAATTCTGTCTGCTGTGCAGTATGCAATGCAGTCACAGCTGTGCCGCCTCCTGGCACAGAAATGGCACAGTTGGTATGTGGAGGCTGCCATACTTTGCTCATGTACATTCGTGGGGCAACAAGTGTTCAGTGTTCTTGTTGTCATACTGTCAACCTAGCTCTTGAAGCAAATCAAGTGGCACATGTCAATTGTGGGAACTGTAGGATGCTGCTTATGTATCAATATGGAGCACGATCGGTCAAATGTGCTGTTTGTAGTTTCGTAACATCAGTTGGGGCCTCAACAAGTATTGCTGAGCAGAAATTCACCAACTAA 438 0.4726 MPVPLAPYPTPPAPYTSPTNAAQSQLVCSGCRNLLMYPVGANSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGASTSIAEQKFTN* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g01047 145 PANTHER PROTEIN LSD1 23 134 IPR040319 -
Pte14g01047 145 Pfam LSD1 zinc finger 105 129 IPR005735 -
Pte14g01047 145 Pfam LSD1 zinc finger 67 91 IPR005735 -
Pte14g01047 145 Pfam LSD1 zinc finger 28 52 IPR005735 -
Pte14g01047 145 NCBIfam zinc finger domain, LSD1 subclass 102 131 IPR005735 -
Pte14g01047 145 NCBIfam zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Pte14g01047 145 NCBIfam zinc finger domain, LSD1 subclass 25 55 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g01047 Pte-Chr14 32104630 32106847 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pte14g01047 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g01047 - - qsa:O6P43_033979 259.225