Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00987 AATGATGTCCGAACCCTCTTCGTCGCTGGCCTCCCTGAAGATGTTAAGCCTCGGGAAATCTATAATCTTTTCAGGGAGTTTCCTGGTTATATGTCCTCGCACCTTCGCAGCCCCACCCAGTCCTCGCAGCCTTTTGCTTTTGTGGTATTCTCAGACCAGCAGTCTGCAATCATGGCAATGCATACATTGAATGGGACAGTGTTTGATATCGAGAAAGGTTCGACCCTCTATATTGATCTGGCTAAATCCAATTCAAGATCTAAACGCATGAGAATAGGTCTAATTAATTCAAGTTCATCGAATGTTTCACGAAATGCTCCTCCATGTCCAACTCTATTCGTGGCGAATCTAGAATCAACTTGTTCTGAAGAAGATCTTGTCCAAATATTTTCAAGATGCCCTGGTTTCTTGAAGCTCAAGATGCAATGCCCATATGGAAATCCAGTTGCATTTGTTGATTTTCAGGATGTTGCCAGTTCAACTGAAGCTTTGAATAATCTACAAGGCACAATACTTCGGTGTACACTAGCTGGCGAGGGGATGCGATTAGAGTACTCT 558 0.4337 NDVRTLFVAGLPEDVKPREIYNLFREFPGYMSSHLRSPTQSSQPFAFVVFSDQQSAIMAMHTLNGTVFDIEKGSTLYIDLAKSNSRSKRMRIGLINSSSSNVSRNAPPCPTLFVANLESTCSEEDLVQIFSRCPGFLKLKMQCPYGNPVAFVDFQDVASSTEALNNLQGTILRCTLAGEGMRLEYS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00987 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 83 IPR000504 GO:0003723
Pte14g00987 186 Gene3D - 1 93 IPR012677 -
Pte14g00987 186 SUPERFAMILY RNA-binding domain, RBD 3 172 IPR035979 GO:0003676
Pte14g00987 186 Gene3D - 98 186 IPR012677 -
Pte14g00987 186 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 99 186 - -
Pte14g00987 186 FunFam RNA-binding protein with multiple splicing 2 1 91 - -
Pte14g00987 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 69 IPR000504 GO:0003723
Pte14g00987 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 172 IPR000504 GO:0003723
Pte14g00987 186 SMART rrm1_1 5 79 IPR000504 GO:0003723
Pte14g00987 186 SMART rrm1_1 111 177 IPR000504 GO:0003723
Pte14g00987 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00987 Pte-Chr14 31490510 31494996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00987 6 174 Eukaryotic Initiation Factors Gene Family AT4G34110 27.933 4.61e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00987 - - pop:7462598 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00987 14 31490510 31494996 Pte14g00987 14 31490510 31494996 RCT