Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00902 ATGTCGCTGAAAAGTATACTCCATGAACTGAAGGAGATGAAAGGTGGAATGGGCAGCATATCAAAGCGAGGTGCAGAAAGAAAGAAATGGCACTGCAGGTCAAAATCTCATATTGCTCCTGATGTTCCTCTAACCCCGTCTGAATCCATTCAACAGGGTCAATGGGCAAATTTACCTCCTGAGTTGTTGTTGGACATTATTCGGAGAGTGGAGGAGAGTGAGACGTCTTGGCGGGCACGGGCTGTCATTGTCTTTTGTGCTTCTGTGTGTAAATCATGGAGGGCAGTTACAAAAGAGATTGTTAAGACACTTGAACAATGTGGACGGCTCACATTTCCTGTCTCGTTGAAACAGGAAGCCAGGTCTCAACGAAATGGTCGGTCAAGTAGAAGATTTCACTCTAAACAGGTGTCACCAAGAGTTCCAGCATGCAACTACAACGTTGGCACCATTGCCTATGAGCTCAATGTCCTCCGCACTAGGGGACCGAGAAGAATGCATAGCATCATGAAGTCCATACCCATCTCTTCTCTTCAGGAAGGAGGCAGTGCCCCAACACCTACATCATTCCCATTCAATTTTGAGGGGCACTCATCTCCCTCAGCTGCTTTGAATGGGAAAGACCCAATTATAGATTTTAGCTCAACAAGCCTCTCAGAAACTCCATCAGCACAGGGTTTGGAAGAGCCACTTGTTCTCAAGAACAAATCTCCAAGATGGCATGAGCAGCTACAATGTTGGTGCCTAAACTTCAAGGGTCGGGTTACTGTTGCGTCTGTGAAGAATTTCCAACTTGTTGCAGCTGTTGATCCTGCCCACAATATTTCTGCTGAAGAACAGGAGAAGGTGATATTGCAGTTCGGCAAGATTGGAAAAGACATATTTACCATGGATTATCGTTACCCTCTCTCTGCCTTCCAAGCGTTTGGCATCTGCTTGAGTAGCTTTGATACCAAGCCCGCCTGTGAATAA 972 0.4609 MSLKSILHELKEMKGGMGSISKRGAERKKWHCRSKSHIAPDVPLTPSESIQQGQWANLPPELLLDIIRRVEESETSWRARAVIVFCASVCKSWRAVTKEIVKTLEQCGRLTFPVSLKQEARSQRNGRSSRRFHSKQVSPRVPACNYNVGTIAYELNVLRTRGPRRMHSIMKSIPISSLQEGGSAPTPTSFPFNFEGHSSPSAALNGKDPIIDFSSTSLSETPSAQGLEEPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPAHNISAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFGICLSSFDTKPACE* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00902 323 Gene3D - 48 103 - -
Pte14g00902 323 SUPERFAMILY Tubby C-terminal domain-like 132 323 IPR025659 -
Pte14g00902 323 PRINTS Tubby superfamily signature 233 250 IPR000007 -
Pte14g00902 323 PRINTS Tubby superfamily signature 251 267 IPR000007 -
Pte14g00902 323 PRINTS Tubby superfamily signature 301 323 IPR000007 -
Pte14g00902 323 PRINTS Tubby superfamily signature 280 299 IPR000007 -
Pte14g00902 323 PRINTS Tubby superfamily signature 145 172 IPR000007 -
Pte14g00902 323 Pfam F-box domain 55 101 IPR001810 GO:0005515
Pte14g00902 323 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Pte14g00902 323 ProSitePatterns Tub family signature 1. 251 264 IPR018066 -
Pte14g00902 323 Gene3D Tubby Protein; Chain A 108 317 IPR025659 -
Pte14g00902 323 ProSitePatterns Tub family signature 2. 308 323 IPR018066 -
Pte14g00902 323 Pfam Tub family 119 318 IPR000007 -
Pte14g00902 323 PANTHER TUBBY-RELATED 49 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00902 Pte-Chr14 30758901 30761716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00902 127 324 TUB Transcription Factor Family AT1G25280 59.556 2.40e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte14g00902 Tub 6.5e-69 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00902 K19600 - jre:108997558 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00902 14 30758901 30761716 Pte14g00902 14 30758901 30761716 RCT
Pte14g00902 14 30758901 30761716 Pte3g01375 3 11984952 11986851 RCT