Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00886 ATGGGGCGTGGAAAGATTGAGATCAAGAAGATTGAGAACCCCACCAACAGGCAGGTCACTTACTCCAAGCGAAGAAATGGTATCTTCAAGAAAGCTCAGGAACTCACTGTTCTCTGTGATGCTAAGGTCTCCCTTATCATGTTCTCTACTACTGGAAAGATGCACGAATATACCAGCCCCACCATAACGACAAAGAAGATCTACGATCAGTATCAGAAAACCTTGGGAGTTGATCTCTGGCAAGGTCACTATGAGAGAATGCAGGACAATCTTCTGAAACTGAGAGAGATCAACAGCAAACTGAGAAGAGATATTAGGCAAAGGACGATGGGTGAGGATCTGGACGATATGAGCTTTCATCAACTGCGTAGTCTCGAGGAAAATATGGATGCTTCCCTAACTCTTATACGTGAAAGAAAGTTCCACGTGATCAAAACTCAGACTGACACTTGCAAGAAAAGGGTTAAGAATCTAGAAGAAATACACGGAAACATGATGCTTGAATTTGAAACCAAGTGTCAGATCGATCCACAGTACGGTTTGGTAGGGTCTATTGAAGGAGACTATGAATCAGCATTGGCACTGGCTAACGGAGCTTCCAATCTCTACGCTTTCCGCCTGCACCACGGCCATTTGGACCTTCGCCACAGTGCTCCAGATCATCACAAGACTCATGATCTACGTCTAGGTTCATTGTCATAA 702 0.4444 MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSTTGKMHEYTSPTITTKKIYDQYQKTLGVDLWQGHYERMQDNLLKLREINSKLRRDIRQRTMGEDLDDMSFHQLRSLEENMDASLTLIRERKFHVIKTQTDTCKKRVKNLEEIHGNMMLEFETKCQIDPQYGLVGSIEGDYESALALANGASNLYAFRLHHGHLDLRHSAPDHHKTHDLRLGSLS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00886 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte14g00886 233 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pte14g00886 233 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pte14g00886 233 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pte14g00886 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte14g00886 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte14g00886 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte14g00886 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte14g00886 233 Coils Coil 84 104 - -
Pte14g00886 233 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte14g00886 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte14g00886 233 Pfam K-box region 82 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte14g00886 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte14g00886 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00886 Pte-Chr14 30563471 30565875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00886 1 221 MADS-box Gene Family AT3G54340 52.036 3.44e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte14g00886 K-box 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00886 K09264 - vvi:100233014 338.191