Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00880 ATGGGTGTTGATCAGTGCTATAGAGTTAGAGATAGGGAGGAATTTCAGCTCGTCGGAGTTCCCGTCAAGCCTGGTGGTAGTTCTATCTTGGTAAAGGCCGATAATGGAAGCTTGGCAAGTACGGAAGTTGAGGCCGACATCAAGAAATCGGATACCAGCTTCATGAAGCGAAAGCGAGGGCGGCCGCCGAAGGGTCAGACCAGAAGTACGAGGTCGGTAAGTAAAAAGAAGGAAGAGGAAGACGTTTGTTTTATTTGCTTCGATGGTGGGAGTCTCGTGCTTTGTGATCGCCGGGGGTGTCCCAAGGCATATCATCCATCCTGCATTAAGCGAGATGCGGCATTCTTCCGCTCAAGAGCGAAATGGACTTGCGGTTGGCATATTTGCAGCAAATGTCAGAAGGCAGCTCATTACATGTGCTACACATGTACATATTCATTGTGCAAAGGATGCACCAAAGGTGCTGATTATGTTTCTGTGAGAGGAAATTTTGGTTTTTGTGGAACCTGTATGAGGACTATAATGCTTATCGAGAATAGTCCACTAGGAAATAAGGAAAAGTGTGAAGTAGATTTTGACGATAAGACTAGCTGGGAGTATCTATTCAAGGTTTACTGGGTATACTTAAAAAGCAAACTGTCTTTAACATTAGATGAGCTCAATCGAGGTCAAAGTCCATGGAAAGGAGATCTGATAATGGGTTCAACAGGTGAAACATGCAGTACACTTAATCATGAAAGACACGAGAAATGTTCAGTTCAAGGAAGTTCCTGTTTAGATATTGAAACAAATGATTGTAAAAGACGAAAGACTATAGACCACTCGAAGTCTACCAACAAGGAGGATTCTACATGTTTTGAAGAATTAGGCATTGATAAGAAGATACCTTTGCCTGAATCTGGAAATTGGGAATCGGATGAGCTGTTAGAAACAAACAATTTGAAAACAAGAAAGAGCATAGACCATCAAAATTCCGTCAGCAAGGAGGCTAGATATGTTGAAAAATTTGGTGTTGGTAAGAAAATGCCTTTGCCTCAATCTACAAATTGGGAAAAGAAGGAGCTTTTGAAAACAAAAGATCCTAAAAGAAGAAAGACCATGGGCCATCGAAATTCTGTCAGAGAGGGGTCTACATACATTGAAAAATTAGGCATTGATGAGAAGATGCATTTGCCTGAATCTACAAACTGGGCATCCAAGGAGCTATTGGAGTTTGTTGGACATGTGAAAAATGGGGATACATCAGTCCTGTCACAATATGGTGTTCAGGCCTTATTGTTGGAATATATTGAGAAAAACAATCTGAGTGATCCTTGCCAGAAGTGTGAAGTTCTCTGTGATGCAAATCTAAAGAATTTGTTTGGGAGAGCACGTGTGAGTCAAATTGAAGTCCCGAAGCTTCTGAAGTCACATTTTCTCGTTGAAGAGTATAGTCCTGGAGAAATTAATCTTAATATGAGAAGCCTTGATTCATCAGACCATGGGGAGACAAATGGTCTCTCTGACAGCAGACTGGTGCTTGATATTGACAAGAGGCATGGACCCCGTAAAGTGATTGGCATACAAGTTTCTCCGAATGATCTGAATGCATTTGAAGCAATTGACAGTCACATTATGAAGTTAATCTATTTACGCCGTAAGCAGATGGAAATTTTAGTTGAGGATGCTGACACGTTCCATCAGAAGGTTGTTGGATCAATAGTTCGGATTAAAATTCCCAATGGAGATCGAAAGGCAGACAAGTACAGGCTTGTCCTAGTTGTAGGCACCAGAGAAGTAGCTCAACAATACAGAGTTGGTATCAGAACAGCCGATGTGATGCTCGAAATTGTCAATGTAAATAAGAAAGAAGTCATTTCAATTGATGGGATCTCGAATCAGGAATTTTCTGAGGATGAATGCAGACGTTTCCGTAGGAGTATAAAAACTGGACTTTCTAAGTTCCTCAATGTGTGTGACATTCAGGAGAAAGAAATGATACTGCGGGCTATAAGAGTTGACAATGGAACAGAAACATTGCAACTTAATCATCTGCATGATAGACCAAGCGAGAAGGGTTACAATAAGGAATATCCTTTTGGTTAA 2085 0.4101 MGVDQCYRVRDREEFQLVGVPVKPGGSSILVKADNGSLASTEVEADIKKSDTSFMKRKRGRPPKGQTRSTRSVSKKKEEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDAAFFRSRAKWTCGWHICSKCQKAAHYMCYTCTYSLCKGCTKGADYVSVRGNFGFCGTCMRTIMLIENSPLGNKEKCEVDFDDKTSWEYLFKVYWVYLKSKLSLTLDELNRGQSPWKGDLIMGSTGETCSTLNHERHEKCSVQGSSCLDIETNDCKRRKTIDHSKSTNKEDSTCFEELGIDKKIPLPESGNWESDELLETNNLKTRKSIDHQNSVSKEARYVEKFGVGKKMPLPQSTNWEKKELLKTKDPKRRKTMGHRNSVREGSTYIEKLGIDEKMHLPESTNWASKELLEFVGHVKNGDTSVLSQYGVQALLLEYIEKNNLSDPCQKCEVLCDANLKNLFGRARVSQIEVPKLLKSHFLVEEYSPGEINLNMRSLDSSDHGETNGLSDSRLVLDIDKRHGPRKVIGIQVSPNDLNAFEAIDSHIMKLIYLRRKQMEILVEDADTFHQKVVGSIVRIKIPNGDRKADKYRLVLVVGTREVAQQYRVGIRTADVMLEIVNVNKKEVISIDGISNQEFSEDECRRFRRSIKTGLSKFLNVCDIQEKEMILRAIRVDNGTETLQLNHLHDRPSEKGYNKEYPFG* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00880 694 SUPERFAMILY FYVE/PHD zinc finger 74 127 IPR011011 -
Pte14g00880 694 FunFam Zinc finger CCCH domain-containing protein 19 72 172 - -
Pte14g00880 694 Gene3D - 536 663 IPR036128 GO:0003677
Pte14g00880 694 SUPERFAMILY Plus3-like 536 661 IPR036128 GO:0003677
Pte14g00880 694 SMART swib_2 392 477 IPR019835 -
Pte14g00880 694 ProSitePatterns Zinc finger PHD-type signature. 83 143 IPR019786 -
Pte14g00880 694 ProSiteProfiles SWIB/MDM2 domain profile. 391 474 IPR003121 -
Pte14g00880 694 CDD PHD5_NSD 82 127 - -
Pte14g00880 694 MobiDBLite consensus disorder prediction 51 73 - -
Pte14g00880 694 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 34 311 - -
Pte14g00880 694 SMART rtf1 533 643 IPR004343 GO:0003677
Pte14g00880 694 Gene3D SWIB/MDM2 domain 386 479 IPR036885 -
Pte14g00880 694 SMART PHD_3 82 128 IPR001965 -
Pte14g00880 694 SUPERFAMILY SWIB/MDM2 domain 395 473 IPR036885 -
Pte14g00880 694 CDD SWIB-MDM2_like 397 472 - -
Pte14g00880 694 ProSiteProfiles Zinc finger PHD-type profile. 80 146 IPR019787 -
Pte14g00880 694 Pfam Plus-3 domain 539 641 IPR004343 GO:0003677
Pte14g00880 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 170 IPR013083 -
Pte14g00880 694 ProSiteProfiles Plus3 domain profile. 533 666 IPR004343 GO:0003677
Pte14g00880 694 Pfam SWIB/MDM2 domain 399 472 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00880 Pte-Chr14 30179931 30183271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00880 6 132 PHD Transcription Factor Family AT5G58610 28.346 9.93e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Pte14g00880 Plus-3 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00880 - - sind:105171107 567.385