Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00814 ATGAAAGGTGCGAAATCGAAGGCTGATACTAGTAAGAATGATTCTAGGCTGAAGAGTAAGAGTGCTGGCGCTGGTAAAAGGTCGAAGAAGGCAGCAAAGGATCCAAACAAGCCTAAGAGGCCTCCTAGTGCTTTCTTTGTGTTCATGGAGCAATTCAGAGAACAGTTCAAGAAGGATAATCCAAATAACAAGTCCGTTGCTGCTGTTGGCAAAGCTGCTGGTCAAAAATGGAAGTCAATGTCTGATGCGGAGAAAGCTCCCTATCAAGCAAAAGCTGATAAGAGAAAGCAAGAATTCGATGTATCAATCAAGTCATACAACAAGAAAATGGTAACCACCTAA 342 0.424 MKGAKSKADTSKNDSRLKSKSAGAGKRSKKAAKDPNKPKRPPSAFFVFMEQFREQFKKDNPNNKSVAAVGKAAGQKWKSMSDAEKAPYQAKADKRKQEFDVSIKSYNKKMVTT* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00814 113 MobiDBLite consensus disorder prediction 1 37 - -
Pte14g00814 113 Gene3D High mobility group box domain 21 113 IPR036910 -
Pte14g00814 113 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Pte14g00814 113 SMART hmgende2 37 108 IPR009071 -
Pte14g00814 113 MobiDBLite consensus disorder prediction 1 45 - -
Pte14g00814 113 MobiDBLite consensus disorder prediction 57 96 - -
Pte14g00814 113 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Pte14g00814 113 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 110 IPR031061 -
Pte14g00814 113 CDD HMG-box_AtHMGB1-like 39 99 - -
Pte14g00814 113 SUPERFAMILY HMG-box 23 108 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00814 Pte-Chr14 29674379 29676257 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte14g00814 HMG_box 9.8e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00814 K25507 - cave:132170547 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00814 14 29674379 29676257 Pte14g00814 14 29674379 29676257 RCT
Pte14g00814 14 29674379 29676257 Pte12g00556 12 4979664 4982712 RCT