Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00638 ATGGCGAGGGAGAAGATTCAGATCCGGAAGATTGATAACGCCACCGCTAGACAAGTGACGTTTTCAAAGCGGCGAAGAGGGCTTTTCAAGAAGGCGGAGGAGCTTTCAGTTCTATGTGATGCTGACGTTGCTCTCATCATCTTCTCTTCCACCGGAAAGCTTTTTGAGTACTCTAATTCAAGCACAAAGGGAATTCTAGAAAGGCACAATCTGCACTCAAAGAATCTATCTAAACTGGAGCAACCTTCTCTCGAACTTCAGCTAGTAGAAGACAGTAATTACTCCAGATTGAGCAACGAAGTTGCTCAGAAGAGTTATAGACTAAGGCAGATGAGAGGAGAAGAACTGCAAGGGCTAAATATTGAAGAACTGCAACAGCTGGAAAAGTGTTTGGAACTTGGCCTGAGTCGTGTCATGGAGAGAAAGGGAGAAAAAATTACGAAGGAGATCGATGAACTCCAACAAAAGGGACAACAATTGATGGAAGAGAACGAGCGACTGAAGCAACAGGTTGCGGATATATCTAATGACAAAAGACGCTGTTCTACTGATAATTCTGAGATTATTGTAGCTGAGGAAGGTCTGTCATCGGAGTCAGTCGCCAATCTTTCCACCTCCTATGGCCCTCCCCAAGACTATGACAGTTCAGATACATCGCTTAAGTTGGGGTTGGCGATATAA 681 0.4435 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSNSSTKGILERHNLHSKNLSKLEQPSLELQLVEDSNYSRLSNEVAQKSYRLRQMRGEELQGLNIEELQQLEKCLELGLSRVMERKGEKITKEIDELQQKGQQLMEENERLKQQVADISNDKRRCSTDNSEIIVAEEGLSSESVANLSTSYGPPQDYDSSDTSLKLGLAI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00638 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte14g00638 226 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte14g00638 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte14g00638 226 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pte14g00638 226 FunFam Transcription factor, MADS-box 13 83 - -
Pte14g00638 226 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte14g00638 226 Coils Coil 136 177 - -
Pte14g00638 226 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Pte14g00638 226 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00638 Pte-Chr14 27241318 27244550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00638 1 224 MADS-box Gene Family AT2G22540 67.797 1.25e-106 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte14g00638 K-box 4.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00638 - - qsu:112018313 338.961