Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00577 ATGATGGTCTTATTGATGAATTATGGATACACAGCTATCACCATCTCAAACAACTACATGACGCATCATGACAAGGTCATGCTGTTGGGCCACAGTGACACATACACAAAAGACAAGAGCATGCAGGTCACAGTTGCCTTTAATCATTTTGGCAAAGGCCTTGTGCAAAGAATGTCTAGGCATGGCTTTTTTCATGTGGTGAACAAAGACTACACACAGTGGAAAATGTATGCCATTAGCGGGAGTGCTGATCCTACTATTTACAGACAAGGAAATAGGTTTTTAGCGTCTAATACCATGTTTAACAAAGAGGTGACTAAATATGAAGACGCACCAGAGAGTAAATGGAGGAACTGGAACTGGAACTGGAGATTAGAAGGAAACATGTTTCTTAATAGCGCGTACTTCAGGGTATCAGGTGCAGATACATCTGCAAGCTATGCAAGGGCTTATAGTTTGAGTGCAAGACCTTCTTCTATGGTTGGCACAGTAACCGTTGGTGGGAGTCTTCGATCTCCCTGTTGA 525 0.4248 MMVLLMNYGYTAITISNNYMTHHDKVMLLGHSDTYTKDKSMQVTVAFNHFGKGLVQRMSRHGFFHVVNKDYTQWKMYAISGSADPTIYRQGNRFLASNTMFNKEVTKYEDAPESKWRNWNWNWRLEGNMFLNSAYFRVSGADTSASYARAYSLSARPSSMVGTVTVGGSLRSPC* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00577 174 PANTHER PECTATE LYASE 18-RELATED 8 166 IPR045032 GO:0030570
Pte14g00577 174 Gene3D - 3 169 IPR012334 -
Pte14g00577 174 PRINTS Pollen allergen Amb family signature 55 74 IPR018082 -
Pte14g00577 174 PRINTS Pollen allergen Amb family signature 77 96 IPR018082 -
Pte14g00577 174 PRINTS Pollen allergen Amb family signature 121 145 IPR018082 -
Pte14g00577 174 PRINTS Pollen allergen Amb family signature 150 173 IPR018082 -
Pte14g00577 174 SMART amb_all 1 100 IPR002022 -
Pte14g00577 174 Pfam Pectate lyase 11 93 IPR002022 -
Pte14g00577 174 SUPERFAMILY Pectin lyase-like 8 161 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00577 Pte-Chr14 26416519 26417189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00577 9 165 Polysaccharide Lyase AT4G24780 69.182 2.40e-72 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00577 K01728 - ath:AT3G27400 250.366