Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00510 ATGTCTAGAATATGTGTGAAAAATCTGCCAAAACATGTAAAAGAAGATAGACTGAAAGAATTCTTTTCTCAGAAAGGTGAAATCACAGACCTCAAGCTTATGCGAACAAAGGATGGCAAGAGTAGGCAATTTGCTTTTGTTGGTTTTCGTACAGAACGACAAGCAGAAGAAGCTATTAAGTACTTCAATAAATCGTATCTTGATACAAGCAGAATTACATGTGAGGTTGCTCGTAAAGTTGGTGATCAAGATATTCCCCGTCCTTGGAGTCGGCACTCTTTGAAGAAAGTTGAGAAAGAAACTAAAGATGAAAAGAAGCTTGACTTGAAAAAAGGCTCAAGTGCGTCACTAACTAGAGAAAAGCATAATAAGGATTCTGGGCTTGACGATCCAGAGCTTCAGGAATTTCTTCAAGTCATGCAACCACGGATTAAAACTAAACTATGGGCAGATGACACATTAATAGCATCAAATGCTGATAATAGTTCCTGTGTCAGTAAGAAGCAAAATCCAAACAAAGATGAATCCAATAGTAAGCTTGTAAAGTCAGAAGTAAATGACTCAATAGAGAATGGATCATCAGATAATCATGAATTTGAGAAATCAGATGAGCATGTCAATGATGAAGTAATGTCAGACAGCGAATACATCAAGAGTAGAATAAGGAAAGATTGGTCAGATTCTGATAGTAGTGGTGAAGATGACTGGAATGAAGCTGAAAACTCTGATGATATGGATGAAAAAAGTGAGAGACAATCCACTGAAATCTTGAGCGTGGAAGGACATGATGTTATGCATAAAGAGGATGTTTTTTGCAAAAATGCCGTAAAAGACCCCTCCAGTCATCCTATAACAGAACAGCTTGAGTTAGACAGACTACCATCAAGTGTGGGAGATGATAAAGAAACTTTTGAGTCTTGCCGGCTATTTATTCGTAATCTGCCATATACAGCAACCGAGGATGAATTGGAGGAGCACTTCAGCAAATTTGGCAACGTGTCCCAGGTTCACCTTGTTATCGACAAAGACACAAAGAGGTCGAAGGGAATAGCTTATGTTCTTTACGAACTCCCAGAATCTGCAGCCAGGGCACTAGAAGAGTTGGATAATTCAATTTTTCAAGGCAGACTATTGCACGTAATGCAAGCAATAAGGAGAGTCTCAGAAAAACAAGAGAGTGATGCCTCTACAATCCATGCTGCAAAGTCTTTCAAGCAAAGAAGGGAGGAAAAACGGAAGTCATCTGAAGCTAGCGGAGATACAAGAGCATGGAATAGCTTATTCATGCGACCTGATACTGTTGTGGAAAACGTTGCTAGGAAATATGGTGTTAGTAAGGGTGATTTATTGGATCGAGAAGCTGATGATCTTGCTGTCCGCATTGCTTTGGGAGAATCTCAAGTTATTGCTGAGACCAAAAAGGCTCTTGCAAATAATGGAGTTAATGTTGGGGCTTTGGAGGAATTAGCAAACGGCAAAGTTGATGGAGCAAAAAGAAGCAATCATGTTTTATTAGTAAAGAACTTGCCTTATGGTTCATCAGAGAATGAATTGGCAAATATGTTCGGGAAATATGGTAATTTGGACAAGATCATTTTACCTCCGACCAAAACAATGGCCTTGGTAGTTTTTCTTGAATCAGCTGAAGCTAGGGCAGCATTCAGAGGCTTAGCTTACAAGCGTTATAGAGATTCGCCATTGTATTTGGAATGGGCTCCTGGAAACATTCTTTCCCAAGCTTCAAAGCCTGAGACTGAAATGAGTAAAGCGATAGTGGGTGAGCATGATGTCAAAAGGGTGTTACTGGAGCAAAGTGTGAAAGGTGTGTTGGACACAGATGCCGATCCTGACAGAGTTGAGTCACGATCCCTATTTGTCAAGAATCTGAATTTTAAAACATCAGATGAGACGCTGAGGAAGCATTTCAATGAACATGTAAAGGAAGGAAGAATTTTAAGTGTCAAGGTTAAAAAGCACATGAAAAGTGGGAAGAATGTTTCCATGGGTTTTGGTTTTATTGAATTCGATTCAGTGGAAACTGCTGCTGCTGTCTGCAAAGATTTACAGGGCACTGTCTTGGACGGGCATGCTCTTATTCTGCAGCTTTGTCACGCCAAGAAAGATGAGCAAGCGCCAAAAACCACAGCAAAGGATAAAAATTCAACTAAATTACTTGTGAGAAATGTAGCTTTTGAGGCAACGAAGAAGGATTTGCGGCAGCTTTTTAGCCCATTTGGTCAGATTAAGAGTTTAAGGCTGCCAATGAAATTTGGTAGTCACAGAGGCTTTGCCTTTGTGGAGTACGTTACAAAGCAGGAGGCAGAAAATGCAATAATAGCACTTTCGAGTACTCATTTGTATGGTAGACATCTGGTTCTGGAGAGAGCAAAGGAAGGCGAGAGCTTGGAGGAATTACGGGCTCGAATTTCAGCTCAATTCACTGATGAGAATGGTGGGGATCAAAATCTAATGAAGGTATCAAAGAAAAGGAAGCACATGGCAGTCTTAGATGAGGGTAGCATTAAGTTTCATAGAATTGCTGATTAA 2547 0.4013 MSRICVKNLPKHVKEDRLKEFFSQKGEITDLKLMRTKDGKSRQFAFVGFRTERQAEEAIKYFNKSYLDTSRITCEVARKVGDQDIPRPWSRHSLKKVEKETKDEKKLDLKKGSSASLTREKHNKDSGLDDPELQEFLQVMQPRIKTKLWADDTLIASNADNSSCVSKKQNPNKDESNSKLVKSEVNDSIENGSSDNHEFEKSDEHVNDEVMSDSEYIKSRIRKDWSDSDSSGEDDWNEAENSDDMDEKSERQSTEILSVEGHDVMHKEDVFCKNAVKDPSSHPITEQLELDRLPSSVGDDKETFESCRLFIRNLPYTATEDELEEHFSKFGNVSQVHLVIDKDTKRSKGIAYVLYELPESAARALEELDNSIFQGRLLHVMQAIRRVSEKQESDASTIHAAKSFKQRREEKRKSSEASGDTRAWNSLFMRPDTVVENVARKYGVSKGDLLDREADDLAVRIALGESQVIAETKKALANNGVNVGALEELANGKVDGAKRSNHVLLVKNLPYGSSENELANMFGKYGNLDKIILPPTKTMALVVFLESAEARAAFRGLAYKRYRDSPLYLEWAPGNILSQASKPETEMSKAIVGEHDVKRVLLEQSVKGVLDTDADPDRVESRSLFVKNLNFKTSDETLRKHFNEHVKEGRILSVKVKKHMKSGKNVSMGFGFIEFDSVETAAAVCKDLQGTVLDGHALILQLCHAKKDEQAPKTTAKDKNSTKLLVRNVAFEATKKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTKQEAENAIIALSSTHLYGRHLVLERAKEGESLEELRARISAQFTDENGGDQNLMKVSKKRKHMAVLDEGSIKFHRIAD* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00510 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 379 IPR000504 GO:0003723
Pte14g00510 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 567 IPR000504 GO:0003723
Pte14g00510 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Pte14g00510 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 724 791 IPR000504 GO:0003723
Pte14g00510 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 624 698 IPR000504 GO:0003723
Pte14g00510 848 SUPERFAMILY RNA-binding domain, RBD 499 579 IPR035979 GO:0003676
Pte14g00510 848 MobiDBLite consensus disorder prediction 85 130 - -
Pte14g00510 848 SUPERFAMILY RNA-binding domain, RBD 620 798 IPR035979 GO:0003676
Pte14g00510 848 CDD RRM6_RBM19_RRM5_MRD1 722 796 - -
Pte14g00510 848 Gene3D - 494 593 IPR012677 -
Pte14g00510 848 Gene3D - 716 821 IPR012677 -
Pte14g00510 848 FunFam Multiple RNA-binding domain-containing protein 1 493 595 - -
Pte14g00510 848 MobiDBLite consensus disorder prediction 391 418 - -
Pte14g00510 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Pte14g00510 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 385 IPR000504 GO:0003723
Pte14g00510 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 622 705 IPR000504 GO:0003723
Pte14g00510 848 SUPERFAMILY RNA-binding domain, RBD 297 386 IPR035979 GO:0003676
Pte14g00510 848 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 707 798 - -
Pte14g00510 848 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Pte14g00510 848 MobiDBLite consensus disorder prediction 191 230 - -
Pte14g00510 848 CDD RRM3_RBM19_RRM2_MRD1 308 381 - -
Pte14g00510 848 CDD RRM1_MRD1 2 77 - -
Pte14g00510 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 574 IPR000504 GO:0003723
Pte14g00510 848 FunFam Nucleotide/nucleic acid binding protein 618 713 - -
Pte14g00510 848 FunFam Multiple RNA-binding domain-containing protein 1 716 822 - -
Pte14g00510 848 Gene3D - 1 126 IPR012677 -
Pte14g00510 848 Gene3D - 291 424 IPR012677 -
Pte14g00510 848 Gene3D - 604 715 IPR012677 -
Pte14g00510 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 722 798 IPR000504 GO:0003723
Pte14g00510 848 SMART rrm2_1 723 794 IPR003954 GO:0003676
Pte14g00510 848 SMART rrm2_1 623 701 IPR003954 GO:0003676
Pte14g00510 848 SMART rrm2_1 308 381 IPR003954 GO:0003676
Pte14g00510 848 SMART rrm2_1 3 75 IPR003954 GO:0003676
Pte14g00510 848 SMART rrm1_1 503 570 IPR000504 GO:0003723
Pte14g00510 848 SMART rrm1_1 623 701 IPR000504 GO:0003723
Pte14g00510 848 SMART rrm1_1 723 794 IPR000504 GO:0003723
Pte14g00510 848 SMART rrm1_1 308 381 IPR000504 GO:0003723
Pte14g00510 848 SMART rrm1_1 3 75 IPR000504 GO:0003723
Pte14g00510 848 MobiDBLite consensus disorder prediction 162 254 - -
Pte14g00510 848 MobiDBLite consensus disorder prediction 391 420 - -
Pte14g00510 848 CDD RRM4_RBM19_RRM3_MRD1 502 573 - -
Pte14g00510 848 CDD RRM5_RBM19_like 623 703 IPR034423 -
Pte14g00510 848 FunFam RNA-binding motif protein 19 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00510 Pte-Chr14 24786100 24796573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00510 610 814 Eukaryotic Initiation Factors Gene Family AT1G49760 30.556 3.13e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00510 K14787 - pvy:116143565 1107.05