Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00406 ATGCTGAGTTACTCGGCAATCTTGCCTCTTCCTGCTCCTCCCTCAGATGGGAATCTGGGTCCTCTGCCCGAGTCACAAGTGACAGAGGAGGAAAGGAGCCATGACAATGCATCTAATGAGGAGAATAAGATAAATCAAGCACCGGCTGCGGCATCTGTTGCAACTCACACTAAAACTATTGGGATTATTCATCCTCCTCCCGACATTAGGTCGATTGTGGATAAAACTTCTCAGTTTGTTGCTAAGAATGGGCCAGAGTTTGAGAAAAGGATTATTGAAAGCAACAAGAACAATGCTAAGTTCAATTTTTTGAATGTTACTGATCCATATCATGCATATTATCAGCATCGATTGTCTGAGTTTCGTTCTCAATCGCAACCATCTGGACAGCAGTCTGCTGATGCACCCCCGTCCGAGTCAGCTCCTGCTGCTGTGGCAACTGATGTTAATGATGCTTCTGCAGCTCCAAAGTCTGATATCTCAGCCCAGTTTAAACCTGTTCAGAAGGTACTTGAGCCCCCTGAAGCTGAACAGTTTACTGTAAGGCTACCTGAAGGAATTACAGGGGAGGAACTGGACATCATTAAGCTCACTGCTCAATTTGTTGCCAGAAATGGGAAGCCTTTTCTGACAGGATTGACAAGTAGAGAGGTCAATAATCCTCAGTTCCATTTTCTGAAGCCAACCCACAGTATGTTCACCTTCTTTACATCTCTCGCTGATGCATATTCAAAAGTCTTGATGCCTCCAAAGGGGTTAACAGAGAAACTGAGAAAAAGTGTTGCTGATAAAAGTACTGTACTTGAAAGGTGCATGAATCGCCTGCAATGGGATCTCTCACAGGAGCAGGCTAGACAGAAAGCTGAGGATGAGGTAGAACAGGAAAGGATCCAAATGGCAATGATTGACTGGCACGATTTTGTGGTTGTTGAGACAATTGATTTTGCAGATGATGAGGATGAAGAGCTGCCACCTCCAATGACCATTGAAGATGTGATAAGGAGAAGTAAGATAACTTCTGTGGACGAATATCCTGTCGAGCCTGGTAAAGAGGTTGAAATGGAAATGGATGATGAAGAGGCCCAACTTATTGAAGAGGGAATGAGGGCAACTAGTTTACAGGACAACGATGAAGGGAAGAGTAATGAAATGAAGGATGCTGAGGAGCCAGAGCCACCAATGAGAATTGTGAAGAACTGGAAGAGACCAGAAGAAAGAATTCCTGCAGAGAGGGATCCGACAAAATATGTTGTGTCCCCGATCACTGGGGAGCTGATTCCCATCAATGAAATGTCTGAACACATGAGGATTTCGCTTATTGACCCCAAGTATAAAGAGCAAAAAGAAAGGATGTTTGCTAAAATACGGGAGACAACTTTGGCTCAGGATGATGAGATTTCAAGAAATATTGTTGGACTTGCAAGAACTCGGCCTGATATCTTTGGTACTACTGAGGAAGAAGTTTCCAATGCGGTGAAGGCGGAGATAGAGAAAAAGAAAGATGAGCAACCAAAGCAAGTTATATGGGATGGCCACACTGGGAGCATTGGACGAACTGCAAACCAAGCGCTGTCACAGAATGCTGGTGGTGAGGATCAAAATGATCCTAATAGCGGTGAAGCTCGGAACCTTCCTGGTCCAGCTGCACCTCCACCTAGACCGGGTTTGCCATCAGTGCGCCCTCTTCCTCTCCCTATTGGACTAACATTGAATGTTCCTAGGGTGCCACCAAATACAATCCAATATCCTTCTCAAACGGGTGTTGCTCCTCCACTAAATCAGCCAAGACCAATGATGCCAATGGTTCCATCAATGCAGGGTATTTCTTCTCAAATAGCCATGTCATCAGGACCACATTCTATGATGGTGAATCGACCTCCTTCAATGCCTACTCATTCGGTATCTATGAATGGTCCTGGTATCCCTGTTCCCCAATTGTCAGGATCCCAGTTCACTCCAGTGCCTGGAATGAGACCTTTTGTACCTGTCCCTGGTCCTCCACTGCACATGATGCCTCCACCACCTATGCCCAATGGGGTGCCGCCGCCACCGCCACCTCCTGAAGAAGCTCCTCCTCCTCTTCCAGAGGAACCAGAACCCAAGAGGCAGAAGCTTGATGATTCTGCACTCATTCCAGAAGACCAATTTTTGGCACAGCACCCGGGCCCAGTTACTATTAGTGTTGCTGTTCCCAACATGGATGAAGGAAATCTGAAAGGACAACTGGTTGATATCACAGTGCAATCTCTTTCTGAAACTGTTGGAAGCCTTAAGGAAAAAATTGCTGGAGAGATCCAGCTTCCTGCTAACAAACAGAAGTTGAGTGGGAAACCTGGATTTCTCAAGGATAACATGTCACTTGCCTCTTACAATGTTGGCCCACGAGAGACGCTTAATCTCTCTCTCAGAGAGCGGGGCGGTAGAAAGAGATAA 2433 0.4591 MLSYSAILPLPAPPSDGNLGPLPESQVTEEERSHDNASNEENKINQAPAAASVATHTKTIGIIHPPPDIRSIVDKTSQFVAKNGPEFEKRIIESNKNNAKFNFLNVTDPYHAYYQHRLSEFRSQSQPSGQQSADAPPSESAPAAVATDVNDASAAPKSDISAQFKPVQKVLEPPEAEQFTVRLPEGITGEELDIIKLTAQFVARNGKPFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLRKSVADKSTVLERCMNRLQWDLSQEQARQKAEDEVEQERIQMAMIDWHDFVVVETIDFADDEDEELPPPMTIEDVIRRSKITSVDEYPVEPGKEVEMEMDDEEAQLIEEGMRATSLQDNDEGKSNEMKDAEEPEPPMRIVKNWKRPEERIPAERDPTKYVVSPITGELIPINEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQALSQNAGGEDQNDPNSGEARNLPGPAAPPPRPGLPSVRPLPLPIGLTLNVPRVPPNTIQYPSQTGVAPPLNQPRPMMPMVPSMQGISSQIAMSSGPHSMMVNRPPSMPTHSVSMNGPGIPVPQLSGSQFTPVPGMRPFVPVPGPPLHMMPPPPMPNGVPPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVTISVAVPNMDEGNLKGQLVDITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLASYNVGPRETLNLSLRERGGRKR* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00406 810 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 50 760 IPR045146 GO:0003723|GO:0045292
Pte14g00406 810 Pfam Surp module 70 121 IPR000061 GO:0003723|GO:0006396
Pte14g00406 810 Pfam Surp module 192 243 IPR000061 GO:0003723|GO:0006396
Pte14g00406 810 FunFam Splicing factor 3a, subunit 1 187 245 - -
Pte14g00406 810 MobiDBLite consensus disorder prediction 672 704 - -
Pte14g00406 810 MobiDBLite consensus disorder prediction 495 561 - -
Pte14g00406 810 FunFam Splicing factor 3A subunit 1 56 127 - -
Pte14g00406 810 SUPERFAMILY Surp module (SWAP domain) 54 122 IPR035967 GO:0003723|GO:0006396
Pte14g00406 810 Pfam Pre-mRNA splicing factor PRP21 like protein 261 475 IPR022030 -
Pte14g00406 810 MobiDBLite consensus disorder prediction 515 540 - -
Pte14g00406 810 Gene3D Surp module 56 129 IPR035967 GO:0003723|GO:0006396
Pte14g00406 810 MobiDBLite consensus disorder prediction 672 693 - -
Pte14g00406 810 ProSiteProfiles Ubiquitin domain profile. 751 807 IPR000626 GO:0005515
Pte14g00406 810 Pfam Ubiquitin family 738 805 IPR000626 GO:0005515
Pte14g00406 810 SUPERFAMILY Ubiquitin-like 703 808 IPR029071 -
Pte14g00406 810 SUPERFAMILY Surp module (SWAP domain) 170 244 IPR035967 GO:0003723|GO:0006396
Pte14g00406 810 MobiDBLite consensus disorder prediction 1 52 - -
Pte14g00406 810 CDD Ubl_SF3a120 723 803 IPR035563 -
Pte14g00406 810 Gene3D - 699 809 - -
Pte14g00406 810 MobiDBLite consensus disorder prediction 372 391 - -
Pte14g00406 810 MobiDBLite consensus disorder prediction 121 157 - -
Pte14g00406 810 MobiDBLite consensus disorder prediction 121 137 - -
Pte14g00406 810 SMART ubq_7 726 803 IPR000626 GO:0005515
Pte14g00406 810 SMART surpneu2 192 245 IPR000061 GO:0003723|GO:0006396
Pte14g00406 810 SMART surpneu2 70 123 IPR000061 GO:0003723|GO:0006396
Pte14g00406 810 FunFam Probable splicing factor 3A subunit 1 699 809 - -
Pte14g00406 810 ProSiteProfiles SURP motif repeat profile. 72 114 IPR000061 GO:0003723|GO:0006396
Pte14g00406 810 Gene3D Surp module 187 245 IPR035967 GO:0003723|GO:0006396
Pte14g00406 810 MobiDBLite consensus disorder prediction 545 561 - -
Pte14g00406 810 ProSiteProfiles SURP motif repeat profile. 194 236 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00406 Pte-Chr14 20397465 20401356 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00406 738 807 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 2.14e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00406 K12825 - qsa:O6P43_003622 1153.27