Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00307 ATGAAGAGAGGAAGAGAAATTGATACAGCCAACTATTTGATGTTCCCCTCTCAAGCAACCAAAGCTGAATCCCTGATCTCATCTCATGATTCTGATACTGGCCGTGTCTTTGAGTGCATGACATGTAACAAGCAGTTCCCTTCGTTTCAAGCACTTGGTGGACACAGGGCAAGCCACAAGAAACCAAAGTCATTGGATGGAAAAGTTGAGACGAGCAAGACGAATGAATCGCCAACCAAAGCAAAGGGTCATGAGTGCTCCATCTGTGGTTTGAAGTTTGCAATTGGTCAGGCTTTAGGTGGTCATATGAGGAGACACAGAGGTGCAGCTTTGAATGATCATGAACATGCACAAGAAGATTCCATACTTGGCAGTTCTGCGCCAGCAGATGTGCGGAAGAATATGAGCACTAAGAGAATTTGGCTAGATTTGAATTTGATGCCTTTGGAGAATGATTTAGAGTTTCTGAAGCTTGGAAAGGTAGCACATTCTGCACCTTCGGTACATTGCTTCTTTTGA 519 0.4393 MKRGREIDTANYLMFPSQATKAESLISSHDSDTGRVFECMTCNKQFPSFQALGGHRASHKKPKSLDGKVETSKTNESPTKAKGHECSICGLKFAIGQALGGHMRRHRGAALNDHEHAQEDSILGSSAPADVRKNMSTKRIWLDLNLMPLENDLEFLKLGKVAHSAPSVHCFF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00307 172 Gene3D Classic Zinc Finger 35 106 - -
Pte14g00307 172 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Pte14g00307 172 MobiDBLite consensus disorder prediction 52 81 - -
Pte14g00307 172 MobiDBLite consensus disorder prediction 59 80 - -
Pte14g00307 172 Pfam C2H2-type zinc finger 36 62 - -
Pte14g00307 172 Pfam C2H2-type zinc finger 84 108 - -
Pte14g00307 172 PANTHER ZINC FINGER PROTEIN ZAT5 18 152 - -
Pte14g00307 172 SMART c2h2final6 37 59 IPR013087 -
Pte14g00307 172 SMART c2h2final6 84 106 IPR013087 -
Pte14g00307 172 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Pte14g00307 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Pte14g00307 172 SUPERFAMILY beta-beta-alpha zinc fingers 35 106 IPR036236 -
Pte14g00307 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00307 Pte-Chr14 11764813 11765669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00307 5 156 C2H2 Transcription Factor Family AT2G37430 46.250 7.01e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte14g00307 zf-C2H2_6 2.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00307 - - gmx:100781134 178.333