Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00260 ATGGGCAAATCAAGCAAGAAATCTGTTACCAAAGTTAATGCAGCTCCAGCTATTGTATCTCCAACCAAGGCCGGGAAAAAAGTGAAGAGGGAAGCTGAGGTCCAGCTGCCGAAGCAAGTTGCTGCAAAAAAGCAGAAGAGAGACGAAAATGCAGAGCAGATTGCTCTGAAGAAAAAGAGAGAAGCCAAGAAGCAAAACATCAAAGAAGAAAGTTCTGATGACTCATCTTCAGAATCTGAGGACGAGAAGCCTGCTGCAAATAAAGTTGCTGCTCCAAAGAAAAAGCCTGCAAGTGCCCCTCCACCAAAGGGAAAACCAGACAGTGTTTCAGACTCCTCATCTGAAGATGATACAGATTCAGATGAAAAAACCAAGGAAGTGCCTGCACTGTCCACTAAGAATGGATCTGTTCCACAGAAGAAAATGGATGACTCCAGCGACAGCTCAGAGTCAGAGGAAGATAATGATGTGAATAAGAACACAACTGTTTCCAAGAAGTTGCCTGCTAAGAAGGTTGAATCAACAGAAGACGAAAGCAGTTCTGACGATGATGGTGATAATGGTAAAGCAAAGTCGACAAAGAATGGGCCTTCTCTTGCTCCAAAGAAGAAAGCTGAAACAAGTGAAAGCTCTGATTCTGATGACAGCTCTGATGAAGACAGTGAAGAGGATGTTAAAGCCCCTGTTCAAGCCAAGACTGGGGCACTTGCTACTAAAACTACCCTTGTGGCTTCCAAAAAGAAGACTGAGTCCAGTGATGATGACTCAAGTGATGATGAAAGCAATTCTGATGATGAGGACAAAATGGATGTTGATAAAGACAAAGGATCCTTGGAAGCTGATGATGTGCCTGATACTAAGAAAGCAAAGCCTGCTTCCAAGACTGGAAAAGCAAACTCAAATTCTGCCTCAAAAGATAGTGATAGCGCAAGTTCAGAAGATGACGATGACGATGACGATGACGAGCAGCCTCCAAAGACCATTAAAGATTCAAAGGACAGTGATGATTCAGAAGAAAGTTCTGAGGATGAGGAGGACACTCCTTCAAAAATTGCTAAGAATGCCTTGAAATCCCCTGCTACTCCGAAAGTAGAAAGTTCCTCCAAGACAACTCTCTTTGTTGGAAACTTATCATTTAATGCGTCAGAAGATGATGTGGCAAACTTCTTTGGAGATGTTGGAGAGGTTTTGCATGTTCGTTTAGCTAATGATACCGATGGAAGGTTTAGAGGGTTTGGGCATGTAGACTTTGCTAATGCAGAAGCAGCAAAAAAAGCTCTTACATTGAATGGAATGGAGTTGCTTGGTCGACCGGTGAAACTTGACATGGCTGTTGAAAGGGGTGCATACACTCCGCATAGCAGCAGCAACAATAATAACTCTTTCCAGAAAGGCCAGGCTCATACTGTGTTTGTGCGTGGTTTTGATACATCACTTGGGGTGGAGGAGGCAAAAAGCAGCCTTCAAGAATTGTTCAGTTCCTGTGGTGAGATTAGCAGGATATCTGTCCCAAAAAATTTTGATTCTGGTGAAATTAAAGGGTTTGCTTATGTGGATTTCAATGATGCTGATAGTTTCAATCAGGCACTGGAACTTAATGGATCTGATCTTGGGGGCTACTCTATCCATGTTGATGAAGCAAAACCACGAGATAGTCAATCTGGAGGTGGTAGAGGTGGTTTTGGAAGGAGTGGTGGTAGAGGTGGTTTTGGAAGAAGTGGTGGTAGAGGTGGTTTTGGGAGAAGTGGGGGTCGGGGAAGCGGCAGAGACAGTGGTGGACGATTTAGTGGAGGACGCAGTGGAAGAGGTGGCAGAGGTGGGGGTGGTCGTGGAGGCAAGCCAAGTCTTACTGCTCCTGGGACAGGGACAAAGACTACTTTTGCAGATGATTAG 1893 0.4443 MGKSSKKSVTKVNAAPAIVSPTKAGKKVKREAEVQLPKQVAAKKQKRDENAEQIALKKKREAKKQNIKEESSDDSSSESEDEKPAANKVAAPKKKPASAPPPKGKPDSVSDSSSEDDTDSDEKTKEVPALSTKNGSVPQKKMDDSSDSSESEEDNDVNKNTTVSKKLPAKKVESTEDESSSDDDGDNGKAKSTKNGPSLAPKKKAETSESSDSDDSSDEDSEEDVKAPVQAKTGALATKTTLVASKKKTESSDDDSSDDESNSDDEDKMDVDKDKGSLEADDVPDTKKAKPASKTGKANSNSASKDSDSASSEDDDDDDDDEQPPKTIKDSKDSDDSEESSEDEEDTPSKIAKNALKSPATPKVESSSKTTLFVGNLSFNASEDDVANFFGDVGEVLHVRLANDTDGRFRGFGHVDFANAEAAKKALTLNGMELLGRPVKLDMAVERGAYTPHSSSNNNNSFQKGQAHTVFVRGFDTSLGVEEAKSSLQELFSSCGEISRISVPKNFDSGEIKGFAYVDFNDADSFNQALELNGSDLGGYSIHVDEAKPRDSQSGGGRGGFGRSGGRGGFGRSGGRGGFGRSGGRGSGRDSGGRFSGGRSGRGGRGGGGRGGKPSLTAPGTGTKTTFADD* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00260 630 MobiDBLite consensus disorder prediction 546 630 - -
Pte14g00260 630 MobiDBLite consensus disorder prediction 143 160 - -
Pte14g00260 630 SUPERFAMILY RNA-binding domain, RBD 359 455 IPR035979 GO:0003676
Pte14g00260 630 MobiDBLite consensus disorder prediction 24 89 - -
Pte14g00260 630 CDD RRM2_NUCLs 469 547 IPR034350 -
Pte14g00260 630 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 206 506 - -
Pte14g00260 630 MobiDBLite consensus disorder prediction 293 307 - -
Pte14g00260 630 Gene3D - 455 555 IPR012677 -
Pte14g00260 630 Gene3D - 298 454 IPR012677 -
Pte14g00260 630 SUPERFAMILY RNA-binding domain, RBD 456 578 IPR035979 GO:0003676
Pte14g00260 630 MobiDBLite consensus disorder prediction 1 368 - -
Pte14g00260 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 446 IPR000504 GO:0003723
Pte14g00260 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 440 IPR000504 GO:0003723
Pte14g00260 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 485 543 IPR000504 GO:0003723
Pte14g00260 630 SMART rrm1_1 371 442 IPR000504 GO:0003723
Pte14g00260 630 SMART rrm1_1 469 545 IPR000504 GO:0003723
Pte14g00260 630 MobiDBLite consensus disorder prediction 268 292 - -
Pte14g00260 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 549 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00260 Pte-Chr14 10627479 10632989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00260 370 548 Eukaryotic Initiation Factors Gene Family AT4G34110 26.804 9.22e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00260 K11294 - qsa:O6P43_026102 369.007