Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00239 ATGATCCGGAATTTTAACGGATCCGATCGTCGGATTCTCACATTCCCGGCAGTTCATCCATGTGAAAACATTGCACCTGTTACTCTTCTCAGCTCATTGATCGCTCTTTCTCAAACCATTTGTGCATACATATCCAATGCTTTTGGTAGTAATGGGCGTAATGCTCGTGAATCAATTCGTCAGGTCGTGGTTCTTCAGATTTTTCTTGAGGAAATTCGCGTTATTCATTCGGATCTTCCGGCATCAGTTAAACTGAGCTTTTCGGAGCTCCATTTGGCACTTCAGAAGCTTAACTTCTTGTTGCAGGATTGTACCCGTGAAGGTGCTCGGTTATGGATGGCGATGGAGTCGGATCGAGTGGCTTCCCAGATGCGGGTCTTGATCCGGTCCATTGGCACGGCACTTGATGTGCTTCCTCTTCCGTTATTGGAGGTCTCAGAGGAACTTAGAGAGCTTGTTGAGTTGCTGATGAATCAAGCGCGAAAGACGGTGTTTGAAGTTGAAACGAATGATAAACGGGTCAAAGTGACGGTTACTTCGATAATAAATCAGTTCAAGAGTGGAATTGTTCCTTCTGAAGGTGATCTGAAATGGGTTCTTGATTCCCTTGGAATCAGAAGCTGGAGCGAATGCAACAGAGAAGTCAAGTTCTTGGAGTCTGAAGTTAGGTTGGAGTGGTTGAATGAAGAGAAGAGAAGGGTATCTTCGCTAAGTAGCTTAATGGGGTTCATGTGCTACTGCAGATGCGTGGTATTTGACAACGTTGATGGTGAAGGGGACAGAAAAAGAATTGAGGGAAGAGAGAGTACCAAGGACATTGGAATCCCAGGTTCTCTGAACCCAGATGATTTCCGATGTCCTATTTCATTGGAGTTCATGACTGACCCTGTGACTATTGTTACAGGTCATACTTATGATCGTTCTTCAATTCTGAGATGGTTCAGAAATGGGAATCCCACTTGTCCTATAACGGGTAAGAAGCTATGCAATACTGAATTGGTGTCCAATTTGGCACTGAGGAAGTTGATTCAGCAATACTGCACTGCGAATGGTTTTCCTCTTGTTGATCCTAGTAGGAAGAATCATGACGAGGCAATGACGGTAGTTCCTGCAAGCTTGATTGCAGAGGAAGCTATGAAAATGTTGGCAAGTTTCCTCGTTGGCAAGCTTAATAATGGAGGTGTGAAGGAGAAGAATAGGGCTGTTTATGAAGTTCGGCTTCTCTCCAAAACATACATTTTTTATAGACTATGTTTGGTGGAAGCTGGAGCTGTCCCTTGTTTGTTGAAGCTGTTGTCATCAAGGGATCGCTCAACACAAGAGAATGCTATTGCAGGCCTTTTGAACCTGTCAAAGCATCCCCAATGTAGAGTTGCAATTGTTGAGAATTGGGGACTCCAACTAATTGTTGAAGTGCTTAAAAAAGGTTTAAAGATCGAATCTCGGAACCACGCTGCTGCTACTTTGTTTTACCTTGCTTCGGTTGAAGATAACCGGAGACTAATTGGTGGTATACATGAAGCAATTCCGGCCTTGATCAAGCTCATCGAAGATGGCAACGGTCGAGGCAAGAAAAATGGCTTGGTTGCCTTGTTTGGACTGCTTATGCACCCTGAAAATCATAGGAGGGTAATTGCAGCTGGTGCAGTCCCCTTGCTTATTAATCTTGCAAGATGTTGTGAGCGAGAAGATCTTCAAACAGATTCTCTTGCTATCTTATCAACTCTAGCAGAAAAATGCGAGGGATCAATTGCAATCCTGCAGTATGAAGCGTTGAATCTACTTGTTGAACTTTTGATCAGTTCTTCAACTTCAAGGGTAGGAAAGGAGAACTGTGTCTCTATGCTGCTTTCTCTTTCAATACACGGTGGGGCAGATGTTGTTGCTCTGTTGGTGAAGAATACTTCCTTGATGGGGTGCCTGTATTCAGTGCTAGCAGAAGGCACATGTCGAGCAAGTAAGAAAGCCAGTGCTCTCATCAGAATCCTCCATGACTTTTGTGAAAGAAGCTCGTCTGGTTTGAAGGTTCCAGCCCTTCCACAAGAACAGTATGTTCACGTATGGTAA 2067 0.4403 MIRNFNGSDRRILTFPAVHPCENIAPVTLLSSLIALSQTICAYISNAFGSNGRNARESIRQVVVLQIFLEEIRVIHSDLPASVKLSFSELHLALQKLNFLLQDCTREGARLWMAMESDRVASQMRVLIRSIGTALDVLPLPLLEVSEELRELVELLMNQARKTVFEVETNDKRVKVTVTSIINQFKSGIVPSEGDLKWVLDSLGIRSWSECNREVKFLESEVRLEWLNEEKRRVSSLSSLMGFMCYCRCVVFDNVDGEGDRKRIEGRESTKDIGIPGSLNPDDFRCPISLEFMTDPVTIVTGHTYDRSSILRWFRNGNPTCPITGKKLCNTELVSNLALRKLIQQYCTANGFPLVDPSRKNHDEAMTVVPASLIAEEAMKMLASFLVGKLNNGGVKEKNRAVYEVRLLSKTYIFYRLCLVEAGAVPCLLKLLSSRDRSTQENAIAGLLNLSKHPQCRVAIVENWGLQLIVEVLKKGLKIESRNHAAATLFYLASVEDNRRLIGGIHEAIPALIKLIEDGNGRGKKNGLVALFGLLMHPENHRRVIAAGAVPLLINLARCCEREDLQTDSLAILSTLAEKCEGSIAILQYEALNLLVELLISSSTSRVGKENCVSMLLSLSIHGGADVVALLVKNTSLMGCLYSVLAEGTCRASKKASALIRILHDFCERSSSGLKVPALPQEQYVHVW* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00239 688 PANTHER U BOX DOMAIN-CONTAINING 69 663 - -
Pte14g00239 688 SMART arm_5 411 452 IPR000225 GO:0005515
Pte14g00239 688 SMART arm_5 453 494 IPR000225 GO:0005515
Pte14g00239 688 SMART arm_5 537 578 IPR000225 GO:0005515
Pte14g00239 688 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Pte14g00239 688 FunFam RING-type E3 ubiquitin transferase 280 352 - -
Pte14g00239 688 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Pte14g00239 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Pte14g00239 688 SUPERFAMILY RING/U-box 280 356 - -
Pte14g00239 688 Pfam Armadillo/beta-catenin-like repeat 416 451 IPR000225 GO:0005515
Pte14g00239 688 FunFam RING-type E3 ubiquitin transferase 360 674 - -
Pte14g00239 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Pte14g00239 688 Gene3D - 385 506 IPR011989 -
Pte14g00239 688 Gene3D - 507 646 IPR011989 -
Pte14g00239 688 SUPERFAMILY ARM repeat 382 663 IPR016024 -
Pte14g00239 688 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Pte14g00239 688 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00239 Pte-Chr14 10144211 10146399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00239 1 689 U-box Gene Family AT1G10560 46.393 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00239 - - pvy:116121335 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00239 14 10144211 10146399 Pte14g00239 14 10144211 10146399 RCT