Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00102 ATGGGCAGGGTAAAGCTAAAAATAAAGAGGCTAGAGAACACAAATGGACGTCAGGCAACTTATGCAAAAAGGAAACAGGGCATTATCAAGAAGGCGAGTGAGTTATCTATACTGTGTGACATAGATATTGTCCTTCTCATGTTCTCACCAACTGGCAAGCCTTCATTATGTAGAGGGAAGCGCAGCAGCTTGGAAGAGCTGATTGGAAAGTTTTCCCAACTGACTCCACAGGAAAGAACAAAGAGGAAATTGGAAAGCCTTGAAGCTCTCAGGAAGACTTTCAGAAGGCTTGATCATGATGTAAATATACCGGAATTATTGGGTACAGGCAATCCAAGCATCGAGGAACTCTCGAACCAAGCTAAGCTTTTGCGGAGTAAAATTTTTGAAACGCAAAAGAGAATAAGCTGTTGGACCGAACCTGACAAGATCTATAGTATAGAACATTTGGGGCAAATGGAAAATTCACTCCAGGAATCACTTAATCAAATTCGAATGAGAAAGGAAAACATACAAAACCAGCAACTTATGTCATTGGAATCCAGTATTTCGTTCAATGACATTCAAGTGCCCTTCGGAATGTGTTCTGGGCAACAGCTTCAGTCCTTCCCATGGACCAACAACAATGACGATCCAAAAATGCTGGTTAATAGGGATGTGGAGTGCTCTACAAGCTCCTCCTATGGCAGCTATGCCAGTTTTATTGGCACAGGAAAAAGTCCAGAAATATCAACTCCCGCCCAAGAGAATGTTCTTCAGAATGAGTTAAATCAAACTGTTCCTCTGAGGCTTCAACTAGGAGGGCAGCTTCCCTACCTGCCTTACAATCTTAACTTATTCAATGACATTAAGATAGAACCAGCTGCAGATATGATTCGAATTGAAAACCCTGTGAATTATCATCTTGCTGGAAGCTTTGAAGCGCATCAACCTGGATGTAGCAATAACTTCCACAGTTGGGCTCCCACATCTGCACGTTGTCCCATGTCTATTTTTGATGAGCATTTTTATGCCCAGGCAAGCTTTCTTTAA 1032 0.4196 MGRVKLKIKRLENTNGRQATYAKRKQGIIKKASELSILCDIDIVLLMFSPTGKPSLCRGKRSSLEELIGKFSQLTPQERTKRKLESLEALRKTFRRLDHDVNIPELLGTGNPSIEELSNQAKLLRSKIFETQKRISCWTEPDKIYSIEHLGQMENSLQESLNQIRMRKENIQNQQLMSLESSISFNDIQVPFGMCSGQQLQSFPWTNNNDDPKMLVNRDVECSTSSSYGSYASFIGTGKSPEISTPAQENVLQNELNQTVPLRLQLGGQLPYLPYNLNLFNDIKIEPAADMIRIENPVNYHLAGSFEAHQPGCSNNFHSWAPTSARCPMSIFDEHFYAQASFL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00102 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 211 - -
Pte14g00102 343 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Pte14g00102 343 CDD MADS 2 54 - -
Pte14g00102 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte14g00102 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte14g00102 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte14g00102 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Pte14g00102 343 Coils Coil 114 134 - -
Pte14g00102 343 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pte14g00102 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte14g00102 343 Coils Coil 154 174 - -
Pte14g00102 343 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Pte14g00102 343 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00102 Pte-Chr14 4102074 4106942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00102 1 314 Type I MADS-box Gene Family AT2G03060 50.287 6.96e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte14g00102 SRF-TF 2.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00102 - - fve:101302452 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00102 14 4102074 4106942 Pte14g00102 14 4102074 4106942 RCT