Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00079 ATGGGGAAATCAAGCAAAAACGCCATTGCAAAAGTTGACGCATCTCCTGCCGTTTTACAATCCACGAAGTCCGGAAAGAATGGTAAAAGAGAAGCTGAAGATGAACTTCCGAAGCAAGCAAGTGCAAAAAAGTCGAAGAGAAATGAAAATGCTGAACAGATTGCTCAGAAGAAAAAGATAGAAGTGAAGAAGCAAAATATCGAAGAAGAAAGTTCTGATGACTCATCCTCGGAATCTGAGAAACCTGTGGCAAAAGCAGTCCTTACTCCAAAGGAACAGCCTGCAAATGCTCCTCCACCTAAGGAAAAACCAGCCAGTGATTCAGATTCCTCTTCAGATGACGAATCAGATGCTTCAGATGAGGATAACGTCCCCCAAAACAAGAAAGTGCCTGCTGTTTCTGCTAAGAATGGATCTGCTTCTCAGAAGAAAAAAGATGATTCAAGTGACAGCTCAGAATCAGAGGATTTGAAGAACACTGTTTCCAAGAATTTGCCTGCTAAGAAGGTTGAATCAACTGATGATGACAGCAGTTCTGATGATAATGATGATGATAATGATGCGAAATCCAATGGAAATGCAGCATCAGACAAAAAGTTGCCTGCTACAAAGAAGGGAACTCCATTGAAGAAATCTGAAACAAGTGAAAGCTCTGAGGAAGACTCGAGTGACAGCTCAGATGATGATGATGATAAAGCTGAATCAAGTGAGAGCTCTGAGTCTGATACTGAGGACAGCTCAGATGATGACAGTGAAGAGGACTTAAAAGCTCCAGCTCAAGCCAAGAATAGTGTACCTACTCCTATAAGTACCCCTGTGGCTTTCGAAAAGATGTCAGAGTCAAGAGATGAGGTGAAAGCACATGCTGCCATGACTAGTGCACATGCTCCTAAAACTACCTTTTTGGCTTCTGAAATGAAGTCTGAGTCAAGTGATGATGACTCGAGTGATGATGAGAGCAGTTCTGATGATGACTCAAGTGATGATGAGAGCAGTTCTGATGATGAGTCGAAAGCCCCTGCTACTCCAAATGTGGAAAGTTCCTCAGGAAGGACTCTCTTTGTTGGCAATTTGTCATATAGTGTGTCAGAAGAGGATGTGACAAACTTCTTCAAAAATGCTGGAGAGATTGTGGATGTTCGTTTTGCTACGGCTGATGATGGGAGGTTTAAGGGATTTGGACATGTGGAATTTGCTAATGCAGAATCAGCAAAAAAAGCTCTTGCCTTGAACAGAAAGGAGTTGCTTAGTCGTCCAGTGAAACTTGACATGGCTGTTGAAAGGGGTGCATACACCCCGCATAGCAGCAGCAACAATAGCAACTCTTTCCAGAAAGGCCAAGCTCATACTGTGTTTGTGCGTGGTTTTGATACATCTCTTGGGGTGGATGAGGTAAGAAGCAGCCTTCAAGAAGTTTTTAGTTCTTGTGGAGAGATTAGCAGGATATCTGTCCCAAAAAATTTTGATTCTGGTGAAATAAAAGGGTTTGCCTACGTTGATTTCAATGATGCTGATAGTTTCAATCAGGCACTAGAACTTAATGGATCTGATCTTGGGGGTTACTCTATCCATGTGGATGAAGCAAAACCACGAGATAATCAATCAGGAGGTGGTAGAGGTGGCTTTGGGAGGAGTGGTGGTAGAGGTGGTTTTGGAAGGAGTGGTGGCAGAGGAAGTGGCAGAGAAGGTGGTGGCCAATTTAGTGGAGGACGTGGAGGCAGAGGTGGAGGTGGTCGTGGAGGACGTGGGGCACCTGGTAAGCCAAGTCTTGCAGCTCCTGGGACAGGGATGAAGACTACTTTTGAAGATGAAGATTAG 1818 0.4389 MGKSSKNAIAKVDASPAVLQSTKSGKNGKREAEDELPKQASAKKSKRNENAEQIAQKKKIEVKKQNIEEESSDDSSSESEKPVAKAVLTPKEQPANAPPPKEKPASDSDSSSDDESDASDEDNVPQNKKVPAVSAKNGSASQKKKDDSSDSSESEDLKNTVSKNLPAKKVESTDDDSSSDDNDDDNDAKSNGNAASDKKLPATKKGTPLKKSETSESSEEDSSDSSDDDDDKAESSESSESDTEDSSDDDSEEDLKAPAQAKNSVPTPISTPVAFEKMSESRDEVKAHAAMTSAHAPKTTFLASEMKSESSDDDSSDDESSSDDDSSDDESSSDDESKAPATPNVESSSGRTLFVGNLSYSVSEEDVTNFFKNAGEIVDVRFATADDGRFKGFGHVEFANAESAKKALALNRKELLSRPVKLDMAVERGAYTPHSSSNNSNSFQKGQAHTVFVRGFDTSLGVDEVRSSLQEVFSSCGEISRISVPKNFDSGEIKGFAYVDFNDADSFNQALELNGSDLGGYSIHVDEAKPRDNQSGGGRGGFGRSGGRGGFGRSGGRGSGREGGGQFSGGRGGRGGGGRGGRGAPGKPSLAAPGTGMKTTFEDED* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00079 605 Coils Coil 48 70 - -
Pte14g00079 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 351 427 IPR000504 GO:0003723
Pte14g00079 605 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 147 487 - -
Pte14g00079 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 524 IPR000504 GO:0003723
Pte14g00079 605 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 353 420 IPR000504 GO:0003723
Pte14g00079 605 MobiDBLite consensus disorder prediction 26 80 - -
Pte14g00079 605 MobiDBLite consensus disorder prediction 311 332 - -
Pte14g00079 605 MobiDBLite consensus disorder prediction 527 605 - -
Pte14g00079 605 Gene3D - 274 434 IPR012677 -
Pte14g00079 605 MobiDBLite consensus disorder prediction 203 218 - -
Pte14g00079 605 CDD RRM2_NUCLs 450 528 IPR034350 -
Pte14g00079 605 Gene3D - 435 549 IPR012677 -
Pte14g00079 605 SMART rrm1_1 352 423 IPR000504 GO:0003723
Pte14g00079 605 SMART rrm1_1 450 526 IPR000504 GO:0003723
Pte14g00079 605 MobiDBLite consensus disorder prediction 219 252 - -
Pte14g00079 605 MobiDBLite consensus disorder prediction 140 157 - -
Pte14g00079 605 SUPERFAMILY RNA-binding domain, RBD 437 560 IPR035979 GO:0003676
Pte14g00079 605 SUPERFAMILY RNA-binding domain, RBD 342 436 IPR035979 GO:0003676
Pte14g00079 605 MobiDBLite consensus disorder prediction 1 350 - -
Pte14g00079 605 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 449 530 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00079 Pte-Chr14 3601403 3606251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00079 352 525 Eukaryotic Initiation Factors Gene Family AT4G34110 27.119 4.36e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00079 K11294 - qsa:O6P43_026103 362.459